Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11914760	0.92[EUR][1000 genomes]
rs11928901	0.92[EUR][1000 genomes]
rs12487141	0.90[EUR][1000 genomes]
rs12490373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12490659	0.92[EUR][1000 genomes]
rs12491480	0.92[EUR][1000 genomes]
rs12493527	0.92[EUR][1000 genomes]
rs12495783	0.90[EUR][1000 genomes]
rs12496609	0.92[EUR][1000 genomes]
rs13058761	0.83[EUR][1000 genomes]
rs13058886	0.83[EUR][1000 genomes]
rs13060198	0.85[EUR][1000 genomes]
rs13074291	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084503	0.92[EUR][1000 genomes]
rs13089469	0.83[EUR][1000 genomes]
rs13095092	0.82[EUR][1000 genomes]
rs13097212	0.83[EUR][1000 genomes]
rs13097548	0.83[EUR][1000 genomes]
rs13098003	0.85[EUR][1000 genomes]
rs34493897	0.83[EUR][1000 genomes]
rs34638812	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34893903	0.92[EUR][1000 genomes]
rs34992749	0.92[EUR][1000 genomes]
rs35053334	0.92[EUR][1000 genomes]
rs56408441	0.83[EUR][1000 genomes]
rs56938121	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59668913	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71322851	0.92[EUR][1000 genomes]
rs71322854	0.92[EUR][1000 genomes]
rs71322855	0.92[EUR][1000 genomes]
rs71322856	0.92[EUR][1000 genomes]
rs71322857	0.82[EUR][1000 genomes]
rs71322858	0.83[EUR][1000 genomes]
rs7430987	0.83[EUR][1000 genomes]
rs7638207	0.92[EUR][1000 genomes]
rs7642606	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89148200-89154600	Weak transcription	Fetal Brain Male	brain
2	chr3:89148600-89153400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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