Variant report

Variant	rs13095092
Chromosome Location	chr3:89235592-89235593
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1040015	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11914760	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11916891	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928901	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12487141	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12490373	0.81[EUR][1000 genomes]
rs12490659	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12491480	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12493524	0.82[EUR][1000 genomes]
rs12493527	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12494615	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495783	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12496279	0.80[EUR][1000 genomes]
rs12496609	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12496791	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13058761	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13058886	0.99[EUR][1000 genomes]
rs13060198	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070668	0.80[EUR][1000 genomes]
rs13071923	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074291	0.82[EUR][1000 genomes]
rs13084503	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13089469	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097212	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097548	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098003	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34493897	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34638812	0.81[EUR][1000 genomes]
rs34855223	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34893903	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34992749	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35053334	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35156943	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35445148	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971332	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56408441	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56938121	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59668913	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778523	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71322851	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71322854	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71322855	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71322856	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71322857	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71322858	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7430987	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638207	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7642606	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1008916	chr3:89206065-89241915	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89227200-89235800	Weak transcription	Fetal Brain Female	brain
2	chr3:89233800-89236200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:89235000-89235800	Weak transcription	Brain Germinal Matrix	brain

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