Variant report

Variant	rs6778523
Chromosome Location	chr3:89252690-89252691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11914760	0.81[AMR][1000 genomes]
rs11916891	0.85[EUR][1000 genomes]
rs12487141	0.86[AMR][1000 genomes]
rs12490659	0.81[AMR][1000 genomes]
rs12491480	0.88[AMR][1000 genomes]
rs12493527	0.88[AMR][1000 genomes]
rs12494615	0.84[EUR][1000 genomes]
rs12495783	0.85[AMR][1000 genomes]
rs12496609	0.81[AMR][1000 genomes]
rs13058761	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13058886	0.82[EUR][1000 genomes]
rs13060198	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs13071923	0.86[EUR][1000 genomes]
rs13089469	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13095092	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13097212	0.82[EUR][1000 genomes]
rs13097548	0.82[EUR][1000 genomes]
rs13098003	0.81[EUR][1000 genomes]
rs34493897	0.82[EUR][1000 genomes]
rs34893903	0.88[AMR][1000 genomes]
rs34992749	0.81[AMR][1000 genomes]
rs35053334	0.81[AMR][1000 genomes]
rs35445148	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56408441	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56938121	0.81[EUR][1000 genomes]
rs59668913	0.81[EUR][1000 genomes]
rs71322855	0.88[AMR][1000 genomes]
rs71322856	0.88[AMR][1000 genomes]
rs71322857	0.81[EUR][1000 genomes]
rs71322858	0.82[EUR][1000 genomes]
rs7430987	0.82[EUR][1000 genomes]
rs7638207	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89250200-89263200	Weak transcription	Fetal Brain Female	brain
2	chr3:89250400-89261800	Weak transcription	Fetal Brain Male	brain
3	chr3:89251200-89259200	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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