Variant report

Variant	rs34855223
Chromosome Location	chr3:89278464-89278465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1040015	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11914760	0.96[ASN][1000 genomes]
rs11916891	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11928901	0.96[ASN][1000 genomes]
rs12487141	0.89[ASN][1000 genomes]
rs12490659	0.89[ASN][1000 genomes]
rs12491480	0.96[ASN][1000 genomes]
rs12493527	0.96[ASN][1000 genomes]
rs12494615	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12495783	0.96[ASN][1000 genomes]
rs12496279	0.84[EUR][1000 genomes]
rs12496609	0.89[ASN][1000 genomes]
rs12496791	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13058761	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13058886	0.86[EUR][1000 genomes]
rs13060198	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13071923	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13084503	0.96[ASN][1000 genomes]
rs13089469	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13095092	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13097212	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13097548	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13098003	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34493897	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34893903	0.96[ASN][1000 genomes]
rs34992749	0.89[ASN][1000 genomes]
rs35053334	0.89[ASN][1000 genomes]
rs35156943	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35445148	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35971332	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56408441	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56938121	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59668913	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71322851	0.96[ASN][1000 genomes]
rs71322854	0.96[ASN][1000 genomes]
rs71322855	0.96[ASN][1000 genomes]
rs71322856	0.96[ASN][1000 genomes]
rs71322857	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71322858	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7430987	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7638207	0.96[ASN][1000 genomes]
rs7642606	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89277800-89278600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:89278000-89278600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:89278200-89286600	Weak transcription	Fetal Brain Female	brain
4	chr3:89278400-89282400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:89278400-89282400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:89278400-89282400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:89278400-89282600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:89278400-89282600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:89278400-89282600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:89278400-89282800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:89278400-89282800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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