Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160565743..160567355-chr3:160576149..160578877,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10513553	0.80[JPT][hapmap]
rs12487861	0.85[JPT][hapmap]
rs13080397	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1598495	0.80[JPT][hapmap]
rs1839017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1839019	0.91[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1851378	0.85[JPT][hapmap]
rs1902282	0.86[JPT][hapmap]
rs4256178	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6775743	0.85[JPT][hapmap]
rs718757	0.86[JPT][hapmap]
rs7618832	0.80[JPT][hapmap]
rs9809208	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs9810290	0.87[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9815499	0.80[JPT][hapmap]
rs9824439	0.87[ASN][1000 genomes]
rs9831287	0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9833075	0.84[JPT][hapmap]
rs9866566	0.86[JPT][hapmap]
rs9868489	0.80[JPT][hapmap]
rs9869116	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv32963	chr3:160555238-160603116	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160569600-160587800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:160576800-160578400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr3:160576800-160578400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:160577000-160579600	Weak transcription	Psoas Muscle	Psoas
5	chr3:160578000-160578400	Enhancers	Fetal Brain Female	brain

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