Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160565743..160567355-chr3:160576149..160578877,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10513553	0.80[JPT][hapmap]
rs12486979	0.83[YRI][hapmap]
rs12494732	0.91[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12637922	0.83[EUR][1000 genomes]
rs13073659	0.83[YRI][hapmap];0.83[EUR][1000 genomes]
rs13080397	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1378657	0.80[JPT][hapmap]
rs1378660	0.83[EUR][1000 genomes]
rs1598495	0.80[JPT][hapmap]
rs1839017	0.90[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2886909	0.83[EUR][1000 genomes]
rs4256178	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs6791128	0.83[YRI][hapmap]
rs6805905	0.82[YRI][hapmap]
rs7618832	0.80[JPT][hapmap]
rs7633816	0.83[YRI][hapmap]
rs7634342	0.83[YRI][hapmap]
rs9809208	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9810290	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815499	0.80[JPT][hapmap]
rs9820796	0.83[YRI][hapmap]
rs9831287	0.87[ASN][1000 genomes]
rs9833075	0.84[JPT][hapmap]
rs9835634	0.83[YRI][hapmap]
rs9868489	0.80[JPT][hapmap]
rs9869116	0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv32963	chr3:160555238-160603116	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160569600-160587800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:160577000-160579600	Weak transcription	Psoas Muscle	Psoas
3	chr3:160578400-160579000	Enhancers	Fetal Thymus	thymus
4	chr3:160578400-160580000	Enhancers	Thymus	Thymus
5	chr3:160578400-160584400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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