Variant report

Variant	rs9835634
Chromosome Location	chr3:160410702-160410703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr3:160410677-160411104	PANC-1	pancreas:	n/a	n/a

Variant related genes	Relation type
ENSG00000207084	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10433459	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs12486979	0.86[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs12637922	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs13073659	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs1378659	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs1403048	0.91[AMR][1000 genomes]
rs17217147	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1839019	0.83[YRI][hapmap]
rs2886905	0.91[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs2886909	0.91[CHB][hapmap]
rs34275580	0.82[EUR][1000 genomes]
rs35355599	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441331	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6781371	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs6791128	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6805905	0.91[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs7633816	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7634342	0.91[CHB][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs7640231	0.82[AMR][1000 genomes]
rs7640348	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs7642371	0.91[CHB][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes]
rs7643513	0.91[AMR][1000 genomes]
rs7649322	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651855	0.89[CEU][hapmap]
rs7651941	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7652749	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs959960	0.91[CHB][hapmap];0.90[AMR][1000 genomes]
rs9809208	1.00[YRI][hapmap]
rs9810290	1.00[YRI][hapmap]
rs9820796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874183	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9883862	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs994966	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160397000-160412800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:160407200-160410800	Weak transcription	Stomach Mucosa	stomach
3	chr3:160408200-160412400	Weak transcription	Placenta	Placenta
4	chr3:160408200-160413000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:160408600-160412600	Enhancers	Hela-S3	cervix
6	chr3:160410000-160415600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:160410600-160411000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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