Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr3:160410677-160411104	PANC-1	pancreas:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160334213..160336560-chr3:160410896..160413841,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207084	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10433459	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11707740	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12638557	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13062999	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13092981	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1378659	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1378661	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1455872	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16831361	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17217147	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2366967	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34275580	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791128	0.84[ASN][1000 genomes]
rs7649322	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7651941	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7652749	0.81[ASN][1000 genomes]
rs959826	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9820796	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9835634	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9874183	0.81[ASN][1000 genomes]
rs994966	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160397000-160412800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:160408200-160412400	Weak transcription	Placenta	Placenta
3	chr3:160408200-160413000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:160408600-160412600	Enhancers	Hela-S3	cervix
5	chr3:160410000-160415600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:160410600-160411000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:160410800-160411000	Enhancers	Stomach Mucosa	stomach
8	chr3:160411000-160411200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:160411000-160412200	Weak transcription	Stomach Mucosa	stomach

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