Variant report

Variant	rs11707740
Chromosome Location	chr3:160416023-160416024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160414728..160416837-chr3:161088893..161091045,2	MCF-7	breast:
2	chr3:160282403..160284997-chr3:160415771..160417896,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229320	Chromatin interaction
ENSG00000186432	Chromatin interaction
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10433459	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12638557	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13062999	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13091372	0.81[ASN][1000 genomes]
rs13092981	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1378659	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1378661	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1455872	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1568573	0.85[JPT][hapmap]
rs16831361	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17217147	0.86[EUR][1000 genomes]
rs2366967	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34275580	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35355599	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6791128	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7651855	0.89[CEU][hapmap]
rs7651941	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs959826	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160413200-160416400	Enhancers	Hela-S3	cervix
2	chr3:160413600-160417200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:160413800-160416800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:160414200-160417000	Enhancers	NH-A	brain
5	chr3:160415400-160416200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr3:160415400-160416400	Enhancers	Osteobl	bone
7	chr3:160415400-160416600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:160415400-160416600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:160415400-160416600	Enhancers	NHLF	lung
10	chr3:160415400-160416800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:160415400-160416800	Enhancers	Fetal Heart	heart
12	chr3:160415400-160417000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:160415400-160417000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr3:160415400-160417000	Enhancers	HUVEC	blood vessel
15	chr3:160415600-160416200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:160415600-160416200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr3:160415600-160416400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:160415600-160417000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:160415600-160417200	Enhancers	Stomach Mucosa	stomach
20	chr3:160415800-160416800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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