Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:10746412..10747171-chr3:160427352..160427872,3	Hela-S3	cervix:
2	chr3:160427305..160429265-chr3:160431854..160434149,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10433459	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11707740	0.82[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12638557	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13092981	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1378659	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1378661	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1455872	0.81[CEU][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16831361	0.82[CEU][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17217147	0.82[EUR][1000 genomes]
rs2366967	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34275580	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35355599	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6441331	0.80[EUR][1000 genomes]
rs7633816	0.86[CEU][hapmap]
rs7651855	0.92[CEU][hapmap]
rs7651941	0.93[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7652749	0.82[EUR][1000 genomes]
rs959826	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9820796	0.82[CEU][hapmap]
rs9835634	0.82[CEU][hapmap]
rs9874183	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160426600-160428600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:160426800-160427800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:160426800-160428400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:160427000-160428000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:160427400-160428200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:160427600-160428000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:160427600-160428200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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