Variant report

Variant	rs6441331
Chromosome Location	chr3:160443738-160443739
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12486979	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs13062999	0.80[EUR][1000 genomes]
rs13073659	0.80[AMR][1000 genomes]
rs13092981	0.80[EUR][1000 genomes]
rs1378655	0.82[AMR][1000 genomes]
rs1378656	0.82[AMR][1000 genomes]
rs1378660	0.80[AMR][1000 genomes]
rs1403048	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs17217147	0.81[ASN][1000 genomes]
rs2886905	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2886909	0.80[AMR][1000 genomes]
rs6781371	0.83[AMR][1000 genomes]
rs6791128	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6805905	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7633816	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7634342	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7640231	0.87[AMR][1000 genomes]
rs7640348	0.84[AMR][1000 genomes]
rs7642371	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7643513	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs7649322	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7652749	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs897494	0.82[AMR][1000 genomes]
rs959826	0.80[EUR][1000 genomes]
rs959960	0.96[AMR][1000 genomes]
rs9820796	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9835634	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9874183	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9883862	0.82[AMR][1000 genomes]
rs994966	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160443000-160443800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:160443000-160443800	Enhancers	NHEK	skin

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