Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160425471..160427689-chr3:160937410..160939692,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169251	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10433459	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11707740	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12638557	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13062999	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13091372	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13092981	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1378659	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1378661	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1455872	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1543234	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1568573	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16831361	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17217147	0.82[EUR][1000 genomes]
rs2366967	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34275580	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35355599	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6441331	0.80[EUR][1000 genomes]
rs7651941	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7652749	0.82[EUR][1000 genomes]
rs9874183	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160424600-160427400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:160425600-160426800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:160425600-160427600	Enhancers	Liver	Liver

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