Variant report

Variant	rs7651941
Chromosome Location	chr3:160412154-160412155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:160412113-160412461	Hela-S3	cervix:	n/a	n/a
2	TFAP2C	chr3:160412099-160414278	Hela-S3	cervix:	n/a	n/a
3	TCF7L2	chr3:160412051-160412616	Hela-S3	cervix:	n/a	n/a
4	RCOR1	chr3:160412110-160412517	Hela-S3	cervix:	n/a	n/a
5	CEBPB	chr3:160412066-160412649	Hela-S3	cervix:	n/a	n/a
6	EP300	chr3:160412143-160412532	Hela-S3	cervix:	n/a	n/a
7	FOS	chr3:160412113-160412509	Hela-S3	cervix:	n/a	n/a
8	MAX	chr3:160411883-160412513	Hela-S3	cervix:	n/a	n/a
9	STAT1	chr3:160411921-160413235	Hela-S3	cervix:	n/a	chr3:160412496-160412504 chr3:160411930-160411942
10	TFAP2A	chr3:160412143-160413264	Hela-S3	cervix:	n/a	chr3:160412364-160412379

No.	Distal block	Cell Line	Cell type
1	chr3:160411138..160414125-chr3:160416765..160419218,2	K562	blood:
2	chr3:160411890..160413956-chr3:160423439..160425541,2	K562	blood:
3	chr3:160334213..160336560-chr3:160410896..160413841,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207084	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10433459	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11707740	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12638557	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13062999	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13092981	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1378659	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1378661	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1455872	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1568573	0.84[JPT][hapmap];0.89[YRI][hapmap]
rs16831361	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17217147	0.93[EUR][1000 genomes]
rs2366967	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34275580	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35355599	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7633816	0.86[CEU][hapmap]
rs7649322	0.81[EUR][1000 genomes]
rs7651855	1.00[CEU][hapmap]
rs959826	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9820796	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs9835634	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs994966	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160397000-160412800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:160408200-160412400	Weak transcription	Placenta	Placenta
3	chr3:160408200-160413000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:160408600-160412600	Enhancers	Hela-S3	cervix
5	chr3:160410000-160415600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:160411000-160412200	Weak transcription	Stomach Mucosa	stomach
7	chr3:160411200-160415400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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