Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160405601..160406222-chr3:160659395..160659940,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10433459	0.81[EUR][1000 genomes]
rs12486979	0.89[AMR][1000 genomes]
rs1378659	0.82[EUR][1000 genomes]
rs1403048	0.91[AMR][1000 genomes]
rs17217147	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2886905	0.87[AMR][1000 genomes]
rs34275580	0.81[EUR][1000 genomes]
rs35355599	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441331	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6791128	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6805905	0.85[AMR][1000 genomes]
rs7633816	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7634342	0.86[AMR][1000 genomes]
rs7640231	0.82[AMR][1000 genomes]
rs7642371	0.87[AMR][1000 genomes]
rs7643513	0.91[AMR][1000 genomes]
rs7651941	0.81[EUR][1000 genomes]
rs7652749	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs959960	0.90[AMR][1000 genomes]
rs9820796	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835634	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874183	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs994966	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160397000-160412800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:160404800-160407000	Enhancers	Hela-S3	cervix
3	chr3:160405400-160406000	Weak transcription	Stomach Mucosa	stomach

Quick Search: