Variant report

Variant	rs6791128
Chromosome Location	chr3:160414223-160414224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TFAP2A	chr3:160413491-160414388	Hela-S3	cervix:	n/a	chr3:160413817-160413832
2	RCOR1	chr3:160413142-160414226	Hela-S3	cervix:	n/a	n/a
3	TFAP2C	chr3:160412099-160414278	Hela-S3	cervix:	n/a	n/a
4	CEBPB	chr3:160412871-160414297	Hela-S3	cervix:	n/a	n/a
5	BRCA1	chr3:160413424-160414257	Hela-S3	cervix:	n/a	n/a
6	GTF2F1	chr3:160413590-160414232	Hela-S3	cervix:	n/a	n/a
7	JUND	chr3:160413508-160414243	Hela-S3	cervix:	n/a	n/a
8	FOS	chr3:160413605-160414284	Hela-S3	cervix:	n/a	n/a
9	MAFK	chr3:160412871-160414397	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000207084	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11707740	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs12486979	0.86[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs12637922	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs13073659	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs1403048	0.87[AMR][1000 genomes]
rs1455872	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs16831361	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs17217147	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1839019	0.83[YRI][hapmap]
rs2886905	0.91[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs2886909	0.91[CHB][hapmap]
rs35355599	0.84[ASN][1000 genomes]
rs6441331	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6781371	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs6805905	0.91[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs7633816	0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7634342	0.91[CHB][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs7640348	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs7642371	0.91[CHB][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes]
rs7643513	0.87[AMR][1000 genomes]
rs7649322	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7652749	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs959960	0.91[CHB][hapmap];0.86[AMR][1000 genomes]
rs9809208	1.00[YRI][hapmap]
rs9810290	1.00[YRI][hapmap]
rs9820796	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9835634	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9874183	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9883862	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs994966	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160410000-160415600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:160411200-160415400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:160412600-160415600	Weak transcription	Stomach Mucosa	stomach
4	chr3:160413200-160415600	Weak transcription	Pancreas	Pancrea
5	chr3:160413200-160416400	Enhancers	Hela-S3	cervix
6	chr3:160413600-160417200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:160413800-160416800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:160414000-160414400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:160414000-160414800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:160414200-160414400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:160414200-160414400	Enhancers	Placenta	Placenta
12	chr3:160414200-160414400	Enhancers	Osteobl	bone
13	chr3:160414200-160417000	Enhancers	NH-A	brain

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