Variant report

Variant	rs7633816
Chromosome Location	chr3:160461351-160461352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160458135..160462797-chr3:160469121..160474305,5	K562	blood:
2	chr3:160461139..160463554-chr3:160471803..160474149,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260572	Chromatin interaction
ENSG00000163590	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10433459	0.84[CEU][hapmap]
rs12486979	0.91[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12637922	0.95[CHB][hapmap];1.00[YRI][hapmap]
rs13073659	0.95[CHB][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs1378655	0.82[AMR][1000 genomes]
rs1378656	0.82[AMR][1000 genomes]
rs1378659	0.85[CEU][hapmap]
rs1378660	0.80[AMR][1000 genomes]
rs1403048	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs1839019	0.83[YRI][hapmap]
rs2886905	0.95[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2886909	0.95[CHB][hapmap];0.80[AMR][1000 genomes]
rs6441331	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6781371	0.95[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs6791128	0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6805905	0.95[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7634342	0.95[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7640231	0.87[AMR][1000 genomes]
rs7640348	0.95[CHB][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs7642371	0.95[CHB][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7643513	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs7649322	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7651855	0.85[CEU][hapmap]
rs7651941	0.86[CEU][hapmap]
rs7652749	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs897494	0.82[AMR][1000 genomes]
rs959960	0.95[CHB][hapmap];0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9809208	1.00[YRI][hapmap]
rs9810290	1.00[YRI][hapmap]
rs9820796	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9835634	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9874183	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9883862	0.95[CHB][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs994966	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160453600-160462200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:160457400-160465000	Weak transcription	Right Atrium	heart

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