Variant report

Variant	rs12494755
Chromosome Location	chr3:157225853-157225854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12485399	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12489204	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12492543	0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12493333	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12498099	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16827747	0.83[EUR][1000 genomes]
rs16827862	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2034093	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2083818	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3749293	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4680380	0.80[ASN][1000 genomes]
rs60734635	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62278667	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6766351	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6783699	0.86[ASN][1000 genomes]
rs6795972	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6798962	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6804345	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157217800-157235400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:157221800-157226000	Weak transcription	Osteobl	bone
3	chr3:157221800-157244800	Weak transcription	NH-A	brain
4	chr3:157222600-157241800	Weak transcription	HSMM	muscle
5	chr3:157223200-157239000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:157224400-157227400	Weak transcription	HUVEC	blood vessel
7	chr3:157225600-157226600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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