Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr3:157258479-157258865	T-47D	breast:	n/a	n/a
2	GATA3	chr3:157258490-157258838	T-47D	breast:	n/a	n/a
3	FOXA1	chr3:157258389-157258876	T-47D	breast:	n/a	chr3:157258619-157258634
4	FOXA1	chr3:157258475-157258798	T-47D	breast:	n/a	chr3:157258619-157258634

Variant related genes	Relation type
C3orf55	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12485399	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12489204	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12492543	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493333	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12494755	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12498099	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16827792	0.87[ASN][1000 genomes]
rs16827862	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2034093	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2083818	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3749293	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680380	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57157485	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60849513	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62278667	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6766351	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6783699	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6795972	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6798962	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6804345	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157250000-157260000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:157252800-157259800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:157258200-157259600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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