Variant report

Variant	rs60849513
Chromosome Location	chr3:157311423-157311424
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12485399	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12489204	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12492543	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12493333	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12498099	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16827792	0.84[ASN][1000 genomes]
rs16827862	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2034093	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2083818	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3749293	0.85[AMR][1000 genomes]
rs4680380	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57157485	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60734635	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62278667	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6766351	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6783699	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6798962	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6804345	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157308600-157312200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:157309000-157312200	Weak transcription	Adipose Nuclei	Adipose
3	chr3:157311400-157311600	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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