Variant report

Variant	rs12497871
Chromosome Location	chr3:110656693-110656694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10433385	0.84[CHB][hapmap]
rs10804481	0.80[ASN][1000 genomes]
rs10804483	0.93[ASN][1000 genomes]
rs10934069	0.90[ASN][1000 genomes]
rs10934071	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10934073	0.81[ASN][1000 genomes]
rs12486131	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12487985	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12489425	0.90[ASN][1000 genomes]
rs12492309	0.84[CHB][hapmap]
rs12496404	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1381837	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16857292	0.90[ASN][1000 genomes]
rs16857314	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16857339	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16857389	0.94[ASN][1000 genomes]
rs2399346	0.90[ASN][1000 genomes]
rs55731361	0.94[ASN][1000 genomes]
rs55821185	0.90[ASN][1000 genomes]
rs55885236	0.90[ASN][1000 genomes]
rs55956794	0.94[ASN][1000 genomes]
rs55979905	0.90[ASN][1000 genomes]
rs57324566	0.86[ASN][1000 genomes]
rs6765133	0.84[CHB][hapmap]
rs6788768	0.90[ASN][1000 genomes]
rs73851731	0.90[ASN][1000 genomes]
rs73851732	0.90[ASN][1000 genomes]
rs73851737	0.90[ASN][1000 genomes]
rs73851749	0.88[ASN][1000 genomes]
rs73851750	0.88[ASN][1000 genomes]
rs73851764	0.90[ASN][1000 genomes]
rs73851765	0.90[ASN][1000 genomes]
rs73851768	0.90[ASN][1000 genomes]
rs73852317	0.94[ASN][1000 genomes]
rs73852320	0.96[ASN][1000 genomes]
rs73852354	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73854204	0.90[ASN][1000 genomes]
rs73854208	0.90[ASN][1000 genomes]
rs73854216	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2762345	chr3:110614389-110668843	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv829674	chr3:110616256-110771049	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110650800-110666600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:110654400-110662600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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