Variant report

Variant	rs55956794
Chromosome Location	chr3:110625552-110625553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110607994..110610105-chr3:110623997..110626169,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10804481	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10804483	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10934069	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10934071	0.90[ASN][1000 genomes]
rs10934073	0.80[ASN][1000 genomes]
rs12486131	0.93[ASN][1000 genomes]
rs12487985	1.00[ASN][1000 genomes]
rs12489425	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12496404	0.93[ASN][1000 genomes]
rs12497871	0.94[ASN][1000 genomes]
rs1381837	0.97[ASN][1000 genomes]
rs16857292	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16857314	0.96[ASN][1000 genomes]
rs16857339	0.98[ASN][1000 genomes]
rs16857389	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2399346	0.96[ASN][1000 genomes]
rs55731361	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55821185	0.96[ASN][1000 genomes]
rs55885236	0.96[ASN][1000 genomes]
rs55979905	0.96[ASN][1000 genomes]
rs57324566	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6788768	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73851731	0.96[ASN][1000 genomes]
rs73851732	0.96[ASN][1000 genomes]
rs73851737	0.96[ASN][1000 genomes]
rs73851749	0.94[ASN][1000 genomes]
rs73851750	0.93[ASN][1000 genomes]
rs73851764	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73851765	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73851768	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73852317	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73852320	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73852354	0.90[ASN][1000 genomes]
rs73854204	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73854208	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73854216	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2762345	chr3:110614389-110668843	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv829674	chr3:110616256-110771049	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110611400-110628600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:110612600-110635600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:110620200-110653800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:110623200-110627200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:110623600-110627400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:110625400-110625600	Enhancers	Fetal Kidney	kidney

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