Variant report

Variant	rs12498443
Chromosome Location	chr4:125599301-125599302
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:125588303..125590760-chr4:125596941..125599513,2	K562	blood:
2	chr4:125579946..125581736-chr4:125597010..125599987,2	MCF-7	breast:
3	chr4:125588728..125590855-chr4:125598883..125601495,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10518439	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501208	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12504009	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12510154	0.99[ASN][1000 genomes]
rs28731131	0.99[ASN][1000 genomes]
rs6836143	1.00[AFR][1000 genomes]
rs72489588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125587000-125601000	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:125590600-125605600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:125592400-125611400	Weak transcription	HepG2	liver
4	chr4:125593000-125601400	Weak transcription	Spleen	Spleen
5	chr4:125593000-125605600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:125593000-125606200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:125593000-125608400	Weak transcription	Pancreas	Pancrea
8	chr4:125593000-125618200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:125593000-125621800	Weak transcription	Fetal Stomach	stomach
10	chr4:125593000-125631200	Weak transcription	Esophagus	oesophagus
11	chr4:125593200-125600600	Weak transcription	Fetal Heart	heart
12	chr4:125593200-125602200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:125593200-125605600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:125593200-125606000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:125593200-125607400	Weak transcription	Gastric	stomach
16	chr4:125593200-125607800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:125593200-125608800	Weak transcription	Colonic Mucosa	Colon
18	chr4:125593200-125609000	Weak transcription	Brain Germinal Matrix	brain
19	chr4:125593400-125599400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:125593400-125600200	Weak transcription	Primary B cells from cord blood	blood
21	chr4:125593400-125600200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:125593400-125601000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr4:125593400-125601200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:125593400-125605200	Weak transcription	Fetal Brain Male	brain
25	chr4:125593400-125605600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr4:125593400-125605600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:125593400-125605600	Weak transcription	K562	blood
28	chr4:125593400-125606800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:125593400-125607400	Weak transcription	Lung	lung
30	chr4:125593400-125621800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:125593400-125629800	Weak transcription	Aorta	Aorta
32	chr4:125593400-125629800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr4:125593400-125631200	Weak transcription	Thymus	Thymus
34	chr4:125593600-125599600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr4:125593600-125599600	Weak transcription	Fetal Muscle Leg	muscle
36	chr4:125593600-125600600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr4:125593600-125600800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr4:125593600-125601000	Weak transcription	Ovary	ovary
39	chr4:125593600-125601400	Weak transcription	Brain Anterior Caudate	brain
40	chr4:125593600-125601400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr4:125593600-125601800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr4:125593600-125605400	Weak transcription	Colon Smooth Muscle	Colon
43	chr4:125593600-125605600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr4:125593600-125605600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr4:125593600-125606000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr4:125593600-125606000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr4:125593600-125606200	Weak transcription	Left Ventricle	heart
48	chr4:125593600-125607000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr4:125593600-125607600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr4:125593600-125609800	Weak transcription	Fetal Kidney	kidney

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