Variant report

Variant	rs12500199
Chromosome Location	chr4:106924150-106924151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10516530	0.83[AMR][1000 genomes]
rs1108244	0.94[ASN][1000 genomes]
rs1108245	0.94[ASN][1000 genomes]
rs1108246	0.94[ASN][1000 genomes]
rs11936196	0.84[AMR][1000 genomes]
rs12509865	1.00[YRI][hapmap]
rs13128995	0.94[ASN][1000 genomes]
rs17036424	0.87[ASN][1000 genomes]
rs17036425	0.93[ASN][1000 genomes]
rs17036480	0.94[ASN][1000 genomes]
rs17036491	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17036492	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17273093	1.00[YRI][hapmap]
rs1893715	0.94[ASN][1000 genomes]
rs1893716	0.94[ASN][1000 genomes]
rs1988966	0.84[AMR][1000 genomes]
rs2156507	0.94[ASN][1000 genomes]
rs2866784	0.93[ASN][1000 genomes]
rs2866785	0.93[ASN][1000 genomes]
rs28790999	0.82[ASN][1000 genomes]
rs28798389	0.84[ASN][1000 genomes]
rs34855241	0.86[ASN][1000 genomes]
rs34909190	0.83[AMR][1000 genomes]
rs35341779	0.86[ASN][1000 genomes]
rs35686571	0.94[ASN][1000 genomes]
rs35716368	0.94[ASN][1000 genomes]
rs4142419	0.89[ASN][1000 genomes]
rs4277780	0.94[ASN][1000 genomes]
rs4345186	0.94[ASN][1000 genomes]
rs4345187	0.94[ASN][1000 genomes]
rs4429790	1.00[YRI][hapmap]
rs4533833	0.83[AMR][1000 genomes]
rs4585305	0.94[ASN][1000 genomes]
rs4698952	0.93[ASN][1000 genomes]
rs4699206	0.93[ASN][1000 genomes]
rs4699207	0.93[ASN][1000 genomes]
rs6533233	0.97[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6812365	0.93[ASN][1000 genomes]
rs6813376	0.93[ASN][1000 genomes]
rs6843870	1.00[YRI][hapmap]
rs71599091	0.86[ASN][1000 genomes]
rs72958841	0.91[ASN][1000 genomes]
rs72960673	0.84[AMR][1000 genomes]
rs7699768	1.00[YRI][hapmap]
rs869929	0.94[ASN][1000 genomes]
rs884691	0.94[ASN][1000 genomes]
rs915880	0.93[ASN][1000 genomes]
rs915881	0.94[ASN][1000 genomes]
rs959786	0.94[ASN][1000 genomes]
rs959787	0.94[ASN][1000 genomes]
rs9683620	0.94[ASN][1000 genomes]
rs9683630	0.94[ASN][1000 genomes]
rs9683643	0.94[ASN][1000 genomes]
rs9683650	0.94[ASN][1000 genomes]
rs9684387	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106907800-106925000	Weak transcription	Pancreas	Pancrea
2	chr4:106919800-106924200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:106921000-106924200	Weak transcription	HepG2	liver
4	chr4:106923800-106924800	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links