Variant report

Variant	rs1988966
Chromosome Location	chr4:106951370-106951371
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10004034	0.90[ASN][1000 genomes]
rs10017707	0.89[ASN][1000 genomes]
rs10155346	1.00[ASN][1000 genomes]
rs10516530	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10516531	0.92[ASN][1000 genomes]
rs11097923	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11936196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938792	0.90[ASN][1000 genomes]
rs12500199	0.84[AMR][1000 genomes]
rs12508029	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512475	0.89[ASN][1000 genomes]
rs17036491	0.84[AMR][1000 genomes]
rs17036492	0.84[AMR][1000 genomes]
rs17036581	0.92[ASN][1000 genomes]
rs2212969	0.90[ASN][1000 genomes]
rs28600991	0.88[ASN][1000 genomes]
rs34305991	0.91[ASN][1000 genomes]
rs34909190	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34923623	0.92[ASN][1000 genomes]
rs4415033	0.88[ASN][1000 genomes]
rs4441824	0.90[ASN][1000 genomes]
rs4533833	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4560491	0.90[ASN][1000 genomes]
rs4582218	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57139070	0.86[AFR][1000 genomes]
rs57983950	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6533233	0.81[AMR][1000 genomes]
rs6533241	0.90[ASN][1000 genomes]
rs6533244	0.90[ASN][1000 genomes]
rs6836796	0.95[ASN][1000 genomes]
rs6848855	0.90[ASN][1000 genomes]
rs6853347	1.00[ASN][1000 genomes]
rs72891619	0.84[AFR][1000 genomes]
rs72891621	0.84[AFR][1000 genomes]
rs72891622	0.84[AFR][1000 genomes]
rs72891625	0.84[AFR][1000 genomes]
rs72891627	0.84[AFR][1000 genomes]
rs72891632	0.84[AFR][1000 genomes]
rs72891640	0.84[AFR][1000 genomes]
rs72891645	0.84[AFR][1000 genomes]
rs72891650	0.84[AFR][1000 genomes]
rs72891660	0.82[AFR][1000 genomes]
rs72891662	0.84[AFR][1000 genomes]
rs72891664	0.84[AFR][1000 genomes]
rs72891668	0.84[AFR][1000 genomes]
rs72891675	0.84[AFR][1000 genomes]
rs72958897	0.82[AFR][1000 genomes]
rs72960673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72960676	0.90[AFR][1000 genomes]
rs72962516	0.86[AFR][1000 genomes]
rs72962593	0.86[AFR][1000 genomes]
rs72962597	0.86[AFR][1000 genomes]
rs72962598	0.84[AFR][1000 genomes]
rs72962600	0.84[AFR][1000 genomes]
rs72962601	0.84[AFR][1000 genomes]
rs72964404	0.84[AFR][1000 genomes]
rs72964409	0.84[AFR][1000 genomes]
rs72964415	0.84[AFR][1000 genomes]
rs72964420	0.84[AFR][1000 genomes]
rs72964437	0.84[AFR][1000 genomes]
rs72964439	0.84[AFR][1000 genomes]
rs72964441	0.84[AFR][1000 genomes]
rs72964454	0.84[AFR][1000 genomes]
rs72964460	0.84[AFR][1000 genomes]
rs72964465	0.84[AFR][1000 genomes]
rs72964475	0.84[AFR][1000 genomes]
rs72964479	0.84[AFR][1000 genomes]
rs72964485	0.84[AFR][1000 genomes]
rs72964491	0.84[AFR][1000 genomes]
rs72968407	0.84[AFR][1000 genomes]
rs72968409	0.84[AFR][1000 genomes]
rs72968432	0.84[AFR][1000 genomes]
rs72968436	0.84[AFR][1000 genomes]
rs72968440	0.84[AFR][1000 genomes]
rs72968441	0.84[AFR][1000 genomes]
rs72968449	0.84[AFR][1000 genomes]
rs7442226	0.90[ASN][1000 genomes]
rs7677394	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7680756	0.90[ASN][1000 genomes]
rs7694217	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9884121	0.92[ASN][1000 genomes]
rs9993259	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106950600-106954000	Weak transcription	Pancreas	Pancrea
2	chr4:106951200-106953800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links