The 2.0 version of rSNPBase

Variant report

Variant rs12508029
Chromosome Location chr4:107005100-107005101
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:106984000-107010200 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr4:106985000-107011400 Weak transcription HepG2 liver
3 chr4:106993000-107008800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr4:106993200-107010000 Weak transcription Left Ventricle heart
5 chr4:106993400-107010400 Weak transcription Skeletal Muscle Male skeletal muscle
6 chr4:106993600-107010000 Weak transcription Right Ventricle heart
7 chr4:106993800-107010800 Weak transcription Placenta Amnion Placenta Amnion
8 chr4:106994600-107015000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr4:106994800-107011600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr4:106995200-107010000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr4:106995200-107011400 Weak transcription Colonic Mucosa Colon
12 chr4:106995400-107011000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr4:106995400-107011000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr4:106995600-107010400 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr4:106996000-107010800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr4:106997200-107031000 Weak transcription Psoas Muscle Psoas
17 chr4:106998000-107010000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr4:106998600-107010200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr4:106998600-107010600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr4:106998600-107010800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr4:106999000-107011000 Weak transcription Brain Cingulate Gyrus brain
22 chr4:106999000-107011800 Weak transcription Fetal Heart heart
23 chr4:106999000-107012000 Weak transcription NHDF-Ad bronchial
24 chr4:106999200-107010000 Weak transcription Fetal Brain Male brain
25 chr4:106999200-107010400 Weak transcription HSMM muscle
26 chr4:107000000-107011400 Weak transcription Primary T helper cells PMA-I stimulated --
27 chr4:107000200-107006800 Weak transcription Brain Inferior Temporal Lobe brain
28 chr4:107000200-107010000 Weak transcription Brain Angular Gyrus brain
29 chr4:107000400-107006000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr4:107001000-107010200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr4:107001200-107018600 Weak transcription HUVEC blood vessel
32 chr4:107001600-107010200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr4:107001600-107010200 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr4:107002600-107008600 Weak transcription Primary B cells from cord blood blood
35 chr4:107002800-107006400 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr4:107002800-107009600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr4:107002800-107010000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
38 chr4:107002800-107010000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr4:107002800-107010000 Weak transcription Duodenum Mucosa Duodenum
40 chr4:107002800-107011400 Weak transcription Primary T helper naive cells from peripheral blood blood
41 chr4:107003000-107010000 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr4:107003000-107010400 Weak transcription Brain Substantia Nigra brain
43 chr4:107003200-107008400 Weak transcription Duodenum Smooth Muscle Duodenum
44 chr4:107003200-107010200 Weak transcription Primary T cells fromperipheralblood blood
45 chr4:107003400-107005600 Weak transcription Primary B cells from peripheral blood blood
46 chr4:107003400-107007800 Weak transcription Small Intestine intestine
47 chr4:107003400-107008400 Weak transcription Fetal Kidney kidney
48 chr4:107003600-107006200 Strong transcription Primary T cells from cord blood blood
49 chr4:107003600-107010800 Weak transcription Colon Smooth Muscle Colon
50 chr4:107003800-107005200 Strong transcription Ovary ovary

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Last update: Aug 31, 2015