Variant report

Variant	rs7442226
Chromosome Location	chr4:107118662-107118663
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107116810..107118888-chr4:107121036..107122571,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10004034	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10025668	0.83[ASN][1000 genomes]
rs10155346	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10516530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10516531	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097923	1.00[ASN][1000 genomes]
rs1134648	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11936196	0.90[ASN][1000 genomes]
rs11938792	1.00[ASN][1000 genomes]
rs12508029	0.96[ASN][1000 genomes]
rs12512475	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17036581	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1988966	0.90[ASN][1000 genomes]
rs2212969	1.00[ASW][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2691805	0.95[ASN][1000 genomes]
rs2691806	0.95[ASN][1000 genomes]
rs2728176	0.95[ASN][1000 genomes]
rs2728177	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28418378	0.83[ASN][1000 genomes]
rs28600991	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2949626	0.94[ASN][1000 genomes]
rs2949649	0.88[ASN][1000 genomes]
rs2949651	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3018057	0.88[ASN][1000 genomes]
rs3018059	0.94[ASN][1000 genomes]
rs3018067	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3109950	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3109951	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3109952	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3109954	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3109956	0.95[ASN][1000 genomes]
rs3109959	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3113246	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113251	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133167	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133172	0.95[ASN][1000 genomes]
rs3133173	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs34305991	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34909190	0.91[ASN][1000 genomes]
rs34923623	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4415033	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4441824	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4516801	1.00[CEU][hapmap]
rs4533833	0.91[ASN][1000 genomes]
rs4560491	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582218	0.99[ASN][1000 genomes]
rs57983950	0.99[ASN][1000 genomes]
rs6533241	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533244	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836796	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6848855	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853347	0.90[ASN][1000 genomes]
rs72960673	0.85[ASN][1000 genomes]
rs7669347	0.84[ASN][1000 genomes]
rs7677394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7680756	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694217	1.00[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[ASN][1000 genomes]
rs9884121	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9991203	0.94[CHB][hapmap];0.81[CHD][hapmap];0.83[ASN][1000 genomes]
rs9993259	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:107075800-107129600	Weak transcription	Spleen	Spleen
4	chr4:107083200-107173400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:107083800-107134000	Weak transcription	Right Ventricle	heart
6	chr4:107083800-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:107084000-107129800	Weak transcription	Lung	lung
8	chr4:107084200-107129600	Weak transcription	Aorta	Aorta
9	chr4:107084400-107141400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr4:107085000-107129600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr4:107085000-107150000	Weak transcription	Dnd41	blood
12	chr4:107085400-107169600	Weak transcription	Fetal Kidney	kidney
13	chr4:107087200-107129800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr4:107088400-107166400	Weak transcription	K562	blood
15	chr4:107091200-107129200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:107091400-107129800	Weak transcription	Pancreas	Pancrea
17	chr4:107103200-107119000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:107104600-107140800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:107105000-107169600	Weak transcription	Fetal Brain Female	brain
20	chr4:107106800-107176400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:107107000-107149600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr4:107107200-107130000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:107108800-107129600	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:107111800-107160200	Weak transcription	NHEK	skin
25	chr4:107112400-107129400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:107112400-107170400	Weak transcription	Thymus	Thymus
27	chr4:107112600-107129600	Weak transcription	Gastric	stomach
28	chr4:107113000-107150800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr4:107113000-107154800	Weak transcription	Brain Angular Gyrus	brain
30	chr4:107113200-107130800	Weak transcription	HSMM	muscle
31	chr4:107113400-107150200	Weak transcription	Osteobl	bone
32	chr4:107113600-107133400	Weak transcription	Fetal Lung	lung
33	chr4:107114400-107149200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr4:107114600-107127600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr4:107114600-107149600	Weak transcription	HSMMtube	muscle
36	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr4:107114800-107127400	Weak transcription	Adipose Nuclei	Adipose
38	chr4:107114800-107129200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr4:107114800-107129400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:107114800-107129400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr4:107114800-107129400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:107114800-107129400	Weak transcription	Fetal Thymus	thymus
43	chr4:107114800-107129600	Weak transcription	Primary B cells from cord blood	blood
44	chr4:107114800-107129600	Weak transcription	Left Ventricle	heart
45	chr4:107114800-107129600	Weak transcription	Ovary	ovary
46	chr4:107114800-107129800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr4:107114800-107129800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr4:107114800-107131400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr4:107114800-107133400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr4:107114800-107133400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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