Variant report

Variant	rs17036581
Chromosome Location	chr4:107035988-107035989
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10004034	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10017707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10025668	0.83[ASN][1000 genomes]
rs10155346	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10516530	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10516531	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097923	0.98[ASN][1000 genomes]
rs1134648	0.93[ASN][1000 genomes]
rs11936196	0.92[ASN][1000 genomes]
rs11938792	0.98[ASN][1000 genomes]
rs12508029	0.98[ASN][1000 genomes]
rs12512475	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1988966	0.92[ASN][1000 genomes]
rs2212969	1.00[ASW][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2691805	0.93[ASN][1000 genomes]
rs2691806	0.93[ASN][1000 genomes]
rs2728176	0.93[ASN][1000 genomes]
rs2728177	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28418378	0.83[ASN][1000 genomes]
rs28600991	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2949626	0.92[ASN][1000 genomes]
rs3018057	0.86[ASN][1000 genomes]
rs3018059	0.92[ASN][1000 genomes]
rs3109950	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3109951	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3109952	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3109954	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3109956	0.93[ASN][1000 genomes]
rs3109959	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3113246	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3113251	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3133167	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3133173	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs34305991	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34909190	0.93[ASN][1000 genomes]
rs34923623	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4415033	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4441824	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4516801	1.00[CEU][hapmap]
rs4533833	0.93[ASN][1000 genomes]
rs4560491	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4582218	0.99[ASN][1000 genomes]
rs57983950	0.97[ASN][1000 genomes]
rs6533241	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6533244	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6836796	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6848855	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6853347	0.92[ASN][1000 genomes]
rs72960673	0.87[ASN][1000 genomes]
rs7442226	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7669347	0.84[ASN][1000 genomes]
rs7677394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7680756	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7694217	1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[ASN][1000 genomes]
rs9884121	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9991203	0.94[CHB][hapmap];0.81[CHD][hapmap];0.83[ASN][1000 genomes]
rs9993259	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107012600-107038400	Weak transcription	NHDF-Ad	bronchial
2	chr4:107029000-107037800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:107029800-107038000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:107030200-107036200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
5	chr4:107030800-107037800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:107031000-107036200	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr4:107031600-107052600	Weak transcription	Fetal Thymus	thymus
8	chr4:107031800-107039400	Weak transcription	Brain Angular Gyrus	brain
9	chr4:107031800-107053400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:107032000-107052200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:107032000-107058200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:107032200-107038400	Weak transcription	Fetal Brain Male	brain
13	chr4:107032400-107037000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:107032600-107039600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:107033400-107039800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr4:107033400-107053000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:107033600-107037600	Strong transcription	Brain Hippocampus Middle	brain
18	chr4:107033600-107037800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:107033600-107038000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:107033600-107052800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:107033600-107053400	Weak transcription	Osteobl	bone
22	chr4:107033800-107036000	Strong transcription	Brain Anterior Caudate	brain
23	chr4:107033800-107036200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr4:107033800-107036800	Weak transcription	Brain Substantia Nigra	brain
25	chr4:107033800-107037800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr4:107033800-107038200	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr4:107033800-107038400	Strong transcription	Primary T cells from cord blood	blood
28	chr4:107033800-107039000	Weak transcription	HSMMtube	muscle
29	chr4:107033800-107053400	Weak transcription	HSMM	muscle
30	chr4:107034000-107037800	Strong transcription	Adipose Nuclei	Adipose
31	chr4:107034000-107038000	Strong transcription	Stomach Smooth Muscle	stomach
32	chr4:107034000-107038400	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr4:107034200-107036800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:107034200-107036800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr4:107034200-107036800	Weak transcription	Fetal Kidney	kidney
36	chr4:107034200-107037400	Strong transcription	Placenta	Placenta
37	chr4:107034200-107037600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr4:107034200-107037800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr4:107034200-107038600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr4:107034200-107040200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr4:107034200-107053400	Weak transcription	Right Ventricle	heart
42	chr4:107034400-107036200	Strong transcription	Fetal Muscle Trunk	muscle
43	chr4:107034400-107036200	Strong transcription	Fetal Muscle Leg	muscle
44	chr4:107034400-107037600	Strong transcription	GM12878-XiMat	blood
45	chr4:107034400-107038000	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr4:107034600-107037000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr4:107034600-107038000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr4:107034800-107037200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:107034800-107037600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr4:107034800-107037600	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links