Variant report

Variant	rs9884121
Chromosome Location	chr4:106966288-106966289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10004034	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10017707	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10155346	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10516530	0.90[ASN][1000 genomes]
rs10516531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11097923	0.88[ASN][1000 genomes]
rs11936196	0.92[ASN][1000 genomes]
rs11938792	0.88[ASN][1000 genomes]
rs12508029	0.91[ASN][1000 genomes]
rs12512475	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17036581	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1988966	0.92[ASN][1000 genomes]
rs2212969	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28600991	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3113246	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34305991	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34909190	0.97[ASN][1000 genomes]
rs34923623	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4415033	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4441824	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4533833	0.97[ASN][1000 genomes]
rs4560491	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4582218	0.89[ASN][1000 genomes]
rs57983950	0.87[ASN][1000 genomes]
rs6533241	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6533244	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6836796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6848855	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6853347	0.92[ASN][1000 genomes]
rs72960673	0.97[ASN][1000 genomes]
rs7442226	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7677394	0.89[ASN][1000 genomes]
rs7680756	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7694217	0.88[ASN][1000 genomes]
rs9993259	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106955000-106969600	Weak transcription	NHLF	lung
2	chr4:106955200-106966600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:106956000-106969800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:106956200-106967200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:106956200-106967400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:106956200-106968200	Weak transcription	Fetal Stomach	stomach
7	chr4:106956200-106969600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:106956200-106970000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:106956400-106966600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:106956600-106969200	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:106956800-106970800	Weak transcription	HSMMtube	muscle
12	chr4:106958000-106966600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:106958400-106969200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:106958400-106969400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:106959200-106969000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:106959200-106969800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr4:106959600-106969200	Weak transcription	Pancreas	Pancrea
18	chr4:106959600-106969600	Weak transcription	Fetal Kidney	kidney
19	chr4:106959600-106983400	Weak transcription	HepG2	liver
20	chr4:106960600-106969400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr4:106961200-106966600	Weak transcription	Fetal Lung	lung
22	chr4:106961600-106969600	Weak transcription	Ovary	ovary
23	chr4:106961800-106966800	Weak transcription	Psoas Muscle	Psoas
24	chr4:106962200-106966800	Weak transcription	Adipose Nuclei	Adipose
25	chr4:106962400-106969400	Weak transcription	NHDF-Ad	bronchial
26	chr4:106962600-106970400	Weak transcription	Small Intestine	intestine
27	chr4:106962800-106967200	Weak transcription	HSMM	muscle
28	chr4:106962800-106969400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr4:106963000-106966600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:106963200-106967000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr4:106963600-106966800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:106964200-106966800	Weak transcription	Placenta	Placenta
33	chr4:106964200-106967200	Weak transcription	Osteobl	bone
34	chr4:106964200-106972000	Weak transcription	Aorta	Aorta
35	chr4:106964600-106967200	Weak transcription	GM12878-XiMat	blood
36	chr4:106964800-106966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:106965000-106966600	Weak transcription	Primary B cells from cord blood	blood
38	chr4:106965000-106966600	Weak transcription	Primary T cells from cord blood	blood
39	chr4:106965000-106966600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr4:106965000-106966600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr4:106965000-106969600	Weak transcription	Brain Hippocampus Middle	brain
42	chr4:106965000-106969600	Weak transcription	Fetal Heart	heart
43	chr4:106965200-106966800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr4:106965200-106969400	Weak transcription	Fetal Brain Female	brain
45	chr4:106965400-106969600	Weak transcription	Brain Substantia Nigra	brain
46	chr4:106965800-106968200	Weak transcription	Brain Anterior Caudate	brain
47	chr4:106965800-106977600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr4:106966000-106967800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr4:106966000-106968400	Weak transcription	Primary B cells from peripheral blood	blood
50	chr4:106966200-106968600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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