Variant report

Variant	rs10155346
Chromosome Location	chr4:106959513-106959514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10004034	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10017707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10516530	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10516531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11097923	0.90[ASN][1000 genomes]
rs11936196	1.00[ASN][1000 genomes]
rs11938792	0.90[ASN][1000 genomes]
rs12508029	0.94[ASN][1000 genomes]
rs12512475	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17036581	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1988966	1.00[ASN][1000 genomes]
rs2212969	0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2553444	1.00[CEU][hapmap]
rs28600991	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34305991	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34909190	0.89[ASN][1000 genomes]
rs34923623	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4415033	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4441824	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4516801	1.00[CEU][hapmap]
rs4533833	0.89[ASN][1000 genomes]
rs4560491	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4582218	0.91[ASN][1000 genomes]
rs57983950	0.89[ASN][1000 genomes]
rs6533241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6533244	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6836796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6848855	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6853347	1.00[ASN][1000 genomes]
rs72960673	0.95[ASN][1000 genomes]
rs7442226	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7677394	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7680756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7694217	0.90[ASN][1000 genomes]
rs9884121	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9991203	0.94[CHB][hapmap]
rs9993259	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106953800-106959600	Enhancers	HepG2	liver
2	chr4:106955000-106969600	Weak transcription	NHLF	lung
3	chr4:106955200-106966600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:106956000-106960600	Weak transcription	Fetal Lung	lung
5	chr4:106956000-106961400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:106956000-106969800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:106956200-106960800	Weak transcription	NHDF-Ad	bronchial
8	chr4:106956200-106967200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:106956200-106967400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr4:106956200-106968200	Weak transcription	Fetal Stomach	stomach
11	chr4:106956200-106969600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:106956200-106970000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:106956400-106966600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:106956600-106961600	Weak transcription	Psoas Muscle	Psoas
15	chr4:106956600-106969200	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:106956800-106970800	Weak transcription	HSMMtube	muscle
17	chr4:106958000-106966600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:106958400-106960600	Weak transcription	Fetal Heart	heart
19	chr4:106958400-106969200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr4:106958400-106969400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:106959200-106959600	Enhancers	Fetal Kidney	kidney
22	chr4:106959200-106959600	Enhancers	Pancreas	Pancrea
23	chr4:106959200-106969000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:106959200-106969800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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