Variant report

Variant	rs3109951
Chromosome Location	chr4:107269918-107269919
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10004034	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10017707	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10025668	0.80[ASN][1000 genomes]
rs11097923	0.95[ASN][1000 genomes]
rs1134648	1.00[ASN][1000 genomes]
rs11938792	0.95[ASN][1000 genomes]
rs12512475	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17036581	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2691805	1.00[ASN][1000 genomes]
rs2691806	1.00[ASN][1000 genomes]
rs2728176	1.00[ASN][1000 genomes]
rs2728177	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28418378	0.80[ASN][1000 genomes]
rs2949626	0.99[ASN][1000 genomes]
rs2949649	0.94[ASN][1000 genomes]
rs2949651	0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3018057	0.93[ASN][1000 genomes]
rs3018059	0.99[ASN][1000 genomes]
rs3018067	0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3109950	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3109952	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3109954	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3109956	1.00[ASN][1000 genomes]
rs3109959	0.98[ASN][1000 genomes]
rs3113246	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3113251	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3133167	0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3133172	1.00[ASN][1000 genomes]
rs3133173	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34305991	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34923623	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4415033	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4441824	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4560491	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4582218	0.94[ASN][1000 genomes]
rs57983950	0.94[ASN][1000 genomes]
rs6533241	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6533244	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6848855	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7442226	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7669347	0.81[ASN][1000 genomes]
rs7677394	0.94[ASN][1000 genomes]
rs7680756	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7694217	0.95[ASN][1000 genomes]
rs9991203	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107243400-107271400	Weak transcription	Right Ventricle	heart
2	chr4:107247000-107271400	Strong transcription	Primary B cells from peripheral blood	blood
3	chr4:107258600-107281400	Weak transcription	Fetal Heart	heart
4	chr4:107259600-107270600	Weak transcription	Brain Substantia Nigra	brain
5	chr4:107259800-107272400	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:107260000-107272200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:107260200-107270400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:107260200-107270600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:107260200-107271800	Weak transcription	Lung	lung
10	chr4:107260200-107272600	Weak transcription	Fetal Intestine Small	intestine
11	chr4:107260200-107274400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:107260200-107274400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:107260200-107275800	Weak transcription	Spleen	Spleen
14	chr4:107260200-107276000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:107260200-107276600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:107260200-107276800	Weak transcription	Psoas Muscle	Psoas
17	chr4:107260400-107274400	Weak transcription	Brain Germinal Matrix	brain
18	chr4:107260400-107276000	Weak transcription	Brain Angular Gyrus	brain
19	chr4:107260400-107276600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr4:107260800-107271800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr4:107260800-107272000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:107260800-107272000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:107260800-107273600	Weak transcription	Thymus	Thymus
24	chr4:107260800-107274000	Weak transcription	Aorta	Aorta
25	chr4:107260800-107274200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr4:107260800-107276000	Weak transcription	Esophagus	oesophagus
27	chr4:107260800-107276000	Weak transcription	Fetal Stomach	stomach
28	chr4:107260800-107276600	Weak transcription	Pancreas	Pancrea
29	chr4:107260800-107285400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:107261800-107270600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:107261800-107272800	Weak transcription	Brain Hippocampus Middle	brain
32	chr4:107261800-107276600	Weak transcription	Ovary	ovary
33	chr4:107262000-107271800	Weak transcription	Fetal Brain Female	brain
34	chr4:107262000-107274200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:107262200-107276600	Weak transcription	Brain Anterior Caudate	brain
36	chr4:107262400-107270800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr4:107262400-107271400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:107262800-107270800	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr4:107263000-107272000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr4:107263400-107273000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr4:107264400-107272800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr4:107264400-107274000	Weak transcription	Left Ventricle	heart
43	chr4:107264600-107271200	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr4:107264600-107271400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr4:107265000-107273000	Strong transcription	Primary T cells from cord blood	blood
46	chr4:107265200-107270400	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr4:107265200-107270800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr4:107265200-107271400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr4:107265400-107270200	Strong transcription	Fetal Thymus	thymus
50	chr4:107265600-107271600	Strong transcription	Primary T cells fromperipheralblood	blood

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