Variant report

Variant	rs2691806
Chromosome Location	chr4:107278191-107278192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107275880..107279456-chr4:107281523..107285039,4	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10004034	0.95[ASN][1000 genomes]
rs10017707	0.94[ASN][1000 genomes]
rs10025668	0.80[ASN][1000 genomes]
rs11097923	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1134648	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938792	0.95[ASN][1000 genomes]
rs12512475	0.94[ASN][1000 genomes]
rs17036581	0.93[ASN][1000 genomes]
rs2691805	1.00[ASN][1000 genomes]
rs2728176	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2728177	1.00[ASN][1000 genomes]
rs28418378	0.80[ASN][1000 genomes]
rs2949626	0.99[ASN][1000 genomes]
rs2949649	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2949651	0.94[ASN][1000 genomes]
rs3018057	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3018059	0.99[ASN][1000 genomes]
rs3018067	0.91[ASN][1000 genomes]
rs3109950	1.00[ASN][1000 genomes]
rs3109951	1.00[ASN][1000 genomes]
rs3109952	1.00[ASN][1000 genomes]
rs3109954	1.00[ASN][1000 genomes]
rs3109956	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3109959	0.98[ASN][1000 genomes]
rs3113246	0.95[ASN][1000 genomes]
rs3113251	1.00[ASN][1000 genomes]
rs3133167	0.98[ASN][1000 genomes]
rs3133172	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133173	0.96[ASN][1000 genomes]
rs34305991	0.94[ASN][1000 genomes]
rs4415033	0.93[ASN][1000 genomes]
rs4441824	0.95[ASN][1000 genomes]
rs4560491	0.95[ASN][1000 genomes]
rs4582218	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57983950	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6533241	0.95[ASN][1000 genomes]
rs6533244	0.95[ASN][1000 genomes]
rs6848855	0.95[ASN][1000 genomes]
rs7442226	0.95[ASN][1000 genomes]
rs7669347	0.81[ASN][1000 genomes]
rs7677394	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7680756	0.95[ASN][1000 genomes]
rs7694217	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9991203	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107258600-107281400	Weak transcription	Fetal Heart	heart
2	chr4:107260800-107285400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:107270200-107280400	Weak transcription	NH-A	brain
4	chr4:107270400-107280000	Weak transcription	Fetal Kidney	kidney
5	chr4:107270600-107286200	Weak transcription	HepG2	liver
6	chr4:107270800-107283200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:107270800-107290600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:107271200-107278200	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:107271200-107286400	Weak transcription	Fetal Intestine Large	intestine
10	chr4:107271400-107278600	Weak transcription	NHDF-Ad	bronchial
11	chr4:107272200-107280400	Weak transcription	HSMM	muscle
12	chr4:107272800-107280000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:107273000-107280200	Weak transcription	NHEK	skin
14	chr4:107273000-107286600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:107273000-107286600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:107273200-107280200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:107273400-107282000	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:107274600-107278600	Weak transcription	Left Ventricle	heart
19	chr4:107275000-107279000	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:107276000-107279600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:107276400-107279000	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr4:107276800-107280000	Weak transcription	NHLF	lung
23	chr4:107277200-107280400	Weak transcription	Osteobl	bone
24	chr4:107277400-107280000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr4:107277800-107278400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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