Variant report

Variant	rs72964465
Chromosome Location	chr4:107053721-107053722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs11933976	1.00[AMR][1000 genomes]
rs11936261	1.00[AMR][1000 genomes]
rs11936375	1.00[AMR][1000 genomes]
rs17036551	1.00[AMR][1000 genomes]
rs17036571	1.00[AMR][1000 genomes]
rs1988966	0.84[AFR][1000 genomes]
rs2230255	0.82[AFR][1000 genomes]
rs56100035	1.00[AMR][1000 genomes]
rs56208962	1.00[AMR][1000 genomes]
rs56727772	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56761478	1.00[AMR][1000 genomes]
rs57139070	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58874453	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59703105	1.00[AMR][1000 genomes]
rs60169642	1.00[AMR][1000 genomes]
rs60697569	1.00[AMR][1000 genomes]
rs60782919	1.00[AMR][1000 genomes]
rs61008564	1.00[AMR][1000 genomes]
rs6818599	1.00[AMR][1000 genomes]
rs72876572	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876587	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876596	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878503	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878506	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878508	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878520	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878531	0.84[AFR][1000 genomes]
rs72878534	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878535	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878538	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878541	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878545	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878548	0.89[AFR][1000 genomes]
rs72878554	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878555	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878559	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878578	0.82[AFR][1000 genomes]
rs72878581	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878592	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878594	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72880210	1.00[AMR][1000 genomes]
rs72891619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891682	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891685	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891700	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72893604	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72893607	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72893622	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72893630	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958897	0.85[AFR][1000 genomes]
rs72960676	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72960686	1.00[AMR][1000 genomes]
rs72962513	1.00[AMR][1000 genomes]
rs72962516	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962593	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962597	0.98[AFR][1000 genomes]
rs72962598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964407	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836955	1.00[AMR][1000 genomes]
rs7661620	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv4450	chr4:107037823-107082669	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv508301	chr4:107049086-107092730	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv1851766	chr4:107052107-107062671	ZNF genes & repeats Strong transcription Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv437409	chr4:107052107-107064347	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv437410	chr4:107052107-107064347	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv437411	chr4:107052107-107074097	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107032000-107058200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:107035200-107057200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:107035600-107083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:107037600-107056200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:107037600-107060600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:107037600-107061600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:107037600-107066400	Weak transcription	Fetal Kidney	kidney
8	chr4:107037800-107077400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:107038000-107055400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:107038000-107056800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:107051800-107054800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr4:107052200-107053800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:107052600-107054000	ZNF genes & repeats	Fetal Intestine Large	intestine
15	chr4:107052600-107054000	ZNF genes & repeats	Fetal Thymus	thymus
16	chr4:107052800-107053800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:107052800-107054000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr4:107052800-107054000	ZNF genes & repeats	Brain Substantia Nigra	brain
19	chr4:107052800-107054600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:107053000-107053800	ZNF genes & repeats	Liver	Liver
21	chr4:107053000-107053800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
22	chr4:107053000-107054000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
23	chr4:107053000-107054000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:107053000-107054000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:107053000-107054000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
26	chr4:107053000-107054000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:107053000-107054000	ZNF genes & repeats	Fetal Lung	lung
28	chr4:107053000-107054000	ZNF genes & repeats	Fetal Muscle Leg	muscle
29	chr4:107053000-107054000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
30	chr4:107053000-107054200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
31	chr4:107053000-107054200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr4:107053000-107054400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
33	chr4:107053000-107055200	ZNF genes & repeats	Fetal Intestine Small	intestine
34	chr4:107053200-107053800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
35	chr4:107053200-107054000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
36	chr4:107053200-107054000	ZNF genes & repeats	Primary B cells from cord blood	blood
37	chr4:107053200-107054000	ZNF genes & repeats	Brain Anterior Caudate	brain
38	chr4:107053200-107054000	ZNF genes & repeats	Fetal Stomach	stomach
39	chr4:107053200-107054000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
40	chr4:107053200-107055200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr4:107053400-107053800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
42	chr4:107053400-107053800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr4:107053400-107053800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
44	chr4:107053400-107053800	ZNF genes & repeats	Brain Hippocampus Middle	brain
45	chr4:107053400-107053800	ZNF genes & repeats	Colonic Mucosa	Colon
46	chr4:107053400-107053800	ZNF genes & repeats	Left Ventricle	heart
47	chr4:107053400-107053800	ZNF genes & repeats	Right Ventricle	heart
48	chr4:107053400-107053800	ZNF genes & repeats	HSMM	muscle
49	chr4:107053400-107054000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr4:107053400-107054000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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