Variant report

Variant	rs72968440
Chromosome Location	chr4:107090969-107090970
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs11933976	1.00[AMR][1000 genomes]
rs11936261	1.00[AMR][1000 genomes]
rs11936375	1.00[AMR][1000 genomes]
rs17036551	1.00[AMR][1000 genomes]
rs17036571	1.00[AMR][1000 genomes]
rs1988966	0.84[AFR][1000 genomes]
rs2230255	0.82[AFR][1000 genomes]
rs56100035	1.00[AMR][1000 genomes]
rs56208962	1.00[AMR][1000 genomes]
rs56727772	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56761478	1.00[AMR][1000 genomes]
rs57139070	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58874453	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59703105	1.00[AMR][1000 genomes]
rs60169642	1.00[AMR][1000 genomes]
rs60697569	1.00[AMR][1000 genomes]
rs60782919	1.00[AMR][1000 genomes]
rs61008564	1.00[AMR][1000 genomes]
rs6818599	1.00[AMR][1000 genomes]
rs72876572	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876587	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876596	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878503	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878506	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878508	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878520	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878531	0.84[AFR][1000 genomes]
rs72878534	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878535	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878538	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878541	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878545	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878548	0.89[AFR][1000 genomes]
rs72878554	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878555	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878559	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878578	0.82[AFR][1000 genomes]
rs72878581	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878592	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878594	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72880210	1.00[AMR][1000 genomes]
rs72891619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891682	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891685	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891700	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72893604	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72893607	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72893622	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72893630	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958897	0.85[AFR][1000 genomes]
rs72960676	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72960686	1.00[AMR][1000 genomes]
rs72962513	1.00[AMR][1000 genomes]
rs72962516	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962593	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962597	0.98[AFR][1000 genomes]
rs72962598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964407	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836955	1.00[AMR][1000 genomes]
rs7661620	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv508301	chr4:107049086-107092730	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv1799357	chr4:107058025-107099737	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1801434	chr4:107058025-107099737	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:107053800-107101600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr4:107054000-107091000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:107054000-107113600	Weak transcription	Brain Anterior Caudate	brain
5	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:107074200-107114400	Weak transcription	NHDF-Ad	bronchial
8	chr4:107074600-107111800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:107075200-107091000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr4:107075800-107114000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:107075800-107118200	Weak transcription	Brain Substantia Nigra	brain
12	chr4:107075800-107129600	Weak transcription	Spleen	Spleen
13	chr4:107076400-107114200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:107078000-107107800	Weak transcription	HSMMtube	muscle
15	chr4:107078200-107116000	Weak transcription	Colonic Mucosa	Colon
16	chr4:107078800-107112200	Weak transcription	Osteobl	bone
17	chr4:107078800-107114200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr4:107083200-107173400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr4:107083800-107114200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:107083800-107134000	Weak transcription	Right Ventricle	heart
21	chr4:107083800-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:107084000-107091000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:107084000-107091000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:107084000-107091000	Weak transcription	Adipose Nuclei	Adipose
25	chr4:107084000-107091000	Weak transcription	Brain Germinal Matrix	brain
26	chr4:107084000-107091000	Weak transcription	Brain Hippocampus Middle	brain
27	chr4:107084000-107091000	Weak transcription	Esophagus	oesophagus
28	chr4:107084000-107091000	Weak transcription	Left Ventricle	heart
29	chr4:107084000-107091000	Weak transcription	Pancreas	Pancrea
30	chr4:107084000-107091200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:107084000-107092000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:107084000-107092400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:107084000-107092400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:107084000-107092600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr4:107084000-107093800	Weak transcription	Fetal Brain Female	brain
36	chr4:107084000-107094000	Weak transcription	Gastric	stomach
37	chr4:107084000-107094200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr4:107084000-107094400	Weak transcription	Thymus	Thymus
39	chr4:107084000-107094600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:107084000-107108600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr4:107084000-107112200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr4:107084000-107116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr4:107084000-107129800	Weak transcription	Lung	lung
44	chr4:107084200-107091000	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr4:107084200-107091000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr4:107084200-107091000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr4:107084200-107092200	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr4:107084200-107093800	Weak transcription	Fetal Stomach	stomach
49	chr4:107084200-107094200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr4:107084200-107096000	Weak transcription	Fetal Muscle Leg	muscle

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