Variant report

Variant	rs58874453
Chromosome Location	chr4:107263167-107263168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107243946..107245943-chr4:107262663..107264283,2	K562	blood:
2	chr4:107235907..107237713-chr4:107263142..107264645,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164022	Chromatin interaction
ENSG00000145348	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs2230255	0.98[AFR][1000 genomes]
rs56727772	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6818599	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876572	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876587	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876596	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878503	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878506	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878508	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878520	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878531	0.86[AFR][1000 genomes]
rs72878534	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878535	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878538	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878541	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878545	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878548	0.91[AFR][1000 genomes]
rs72878554	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878555	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878559	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878578	0.98[AFR][1000 genomes]
rs72878581	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878592	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878594	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72880210	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891619	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891621	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891622	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891625	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891627	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891632	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891640	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891645	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891650	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891660	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891662	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891664	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891668	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891675	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891682	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891685	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891700	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72893604	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72893607	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72893622	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72893630	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962597	0.82[AFR][1000 genomes]
rs72962598	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962600	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962601	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964404	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964407	1.00[AMR][1000 genomes]
rs72964409	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964415	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964420	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964437	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964439	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964441	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964454	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964460	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964465	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964475	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964479	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964485	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964491	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968407	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968409	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968432	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968436	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968440	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968441	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968449	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107243400-107271400	Weak transcription	Right Ventricle	heart
2	chr4:107247000-107263600	Strong transcription	Fetal Thymus	thymus
3	chr4:107247000-107271400	Strong transcription	Primary B cells from peripheral blood	blood
4	chr4:107247600-107263600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:107253200-107268200	Weak transcription	NHEK	skin
6	chr4:107255800-107266800	Weak transcription	Stomach Mucosa	stomach
7	chr4:107256200-107266200	Weak transcription	HMEC	breast
8	chr4:107258400-107263400	Weak transcription	Hela-S3	cervix
9	chr4:107258600-107281400	Weak transcription	Fetal Heart	heart
10	chr4:107259000-107267600	Weak transcription	K562	blood
11	chr4:107259200-107265600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:107259600-107270600	Weak transcription	Brain Substantia Nigra	brain
13	chr4:107259800-107263200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:107259800-107263200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr4:107259800-107266600	Strong transcription	Primary B cells from cord blood	blood
16	chr4:107259800-107272400	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:107260000-107272200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:107260200-107265600	Weak transcription	Small Intestine	intestine
19	chr4:107260200-107265800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr4:107260200-107267600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr4:107260200-107268000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr4:107260200-107268000	Weak transcription	Gastric	stomach
23	chr4:107260200-107269800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:107260200-107269800	Weak transcription	Fetal Brain Male	brain
25	chr4:107260200-107269800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr4:107260200-107270400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr4:107260200-107270600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:107260200-107271800	Weak transcription	Lung	lung
29	chr4:107260200-107272600	Weak transcription	Fetal Intestine Small	intestine
30	chr4:107260200-107274400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr4:107260200-107274400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr4:107260200-107275800	Weak transcription	Spleen	Spleen
33	chr4:107260200-107276000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr4:107260200-107276600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:107260200-107276800	Weak transcription	Psoas Muscle	Psoas
36	chr4:107260400-107263200	Weak transcription	HepG2	liver
37	chr4:107260400-107265200	Weak transcription	NHLF	lung
38	chr4:107260400-107268000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr4:107260400-107268800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr4:107260400-107268800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr4:107260400-107269400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr4:107260400-107274400	Weak transcription	Brain Germinal Matrix	brain
43	chr4:107260400-107276000	Weak transcription	Brain Angular Gyrus	brain
44	chr4:107260400-107276600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr4:107260600-107265600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr4:107260600-107267600	Weak transcription	Adipose Nuclei	Adipose
47	chr4:107260600-107268600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr4:107260600-107269800	Weak transcription	Fetal Muscle Leg	muscle
49	chr4:107260800-107263400	Weak transcription	Left Ventricle	heart
50	chr4:107260800-107265200	Weak transcription	Osteobl	bone

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