Variant report

Variant	rs72878548
Chromosome Location	chr4:107225678-107225679
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107224095..107225735-chr4:107236744..107238775,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164022	Chromatin interaction
ENSG00000145348	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs2230255	0.89[AFR][1000 genomes]
rs56727772	0.89[AFR][1000 genomes]
rs57139070	0.87[AFR][1000 genomes]
rs58874453	0.91[AFR][1000 genomes]
rs6818599	0.84[AFR][1000 genomes]
rs72876572	0.93[AFR][1000 genomes]
rs72876587	0.98[AFR][1000 genomes]
rs72876596	0.98[AFR][1000 genomes]
rs72878503	0.98[AFR][1000 genomes]
rs72878506	0.98[AFR][1000 genomes]
rs72878508	0.98[AFR][1000 genomes]
rs72878520	0.98[AFR][1000 genomes]
rs72878531	0.91[AFR][1000 genomes]
rs72878534	0.98[AFR][1000 genomes]
rs72878535	0.98[AFR][1000 genomes]
rs72878538	0.98[AFR][1000 genomes]
rs72878541	0.98[AFR][1000 genomes]
rs72878545	0.98[AFR][1000 genomes]
rs72878554	0.98[AFR][1000 genomes]
rs72878555	0.98[AFR][1000 genomes]
rs72878559	0.89[AFR][1000 genomes]
rs72878578	0.89[AFR][1000 genomes]
rs72878581	0.89[AFR][1000 genomes]
rs72878592	0.89[AFR][1000 genomes]
rs72878594	0.87[AFR][1000 genomes]
rs72880210	0.84[AFR][1000 genomes]
rs72891619	0.89[AFR][1000 genomes]
rs72891621	0.89[AFR][1000 genomes]
rs72891622	0.89[AFR][1000 genomes]
rs72891625	0.89[AFR][1000 genomes]
rs72891627	0.89[AFR][1000 genomes]
rs72891632	0.89[AFR][1000 genomes]
rs72891640	0.89[AFR][1000 genomes]
rs72891645	0.89[AFR][1000 genomes]
rs72891650	0.89[AFR][1000 genomes]
rs72891660	0.87[AFR][1000 genomes]
rs72891662	0.89[AFR][1000 genomes]
rs72891664	0.89[AFR][1000 genomes]
rs72891668	0.89[AFR][1000 genomes]
rs72891675	0.89[AFR][1000 genomes]
rs72891682	0.93[AFR][1000 genomes]
rs72891685	0.93[AFR][1000 genomes]
rs72891700	0.93[AFR][1000 genomes]
rs72893604	0.93[AFR][1000 genomes]
rs72893607	0.93[AFR][1000 genomes]
rs72893622	0.93[AFR][1000 genomes]
rs72893630	0.93[AFR][1000 genomes]
rs72962516	0.87[AFR][1000 genomes]
rs72962593	0.87[AFR][1000 genomes]
rs72962597	0.87[AFR][1000 genomes]
rs72962598	0.89[AFR][1000 genomes]
rs72962600	0.89[AFR][1000 genomes]
rs72962601	0.89[AFR][1000 genomes]
rs72964404	0.89[AFR][1000 genomes]
rs72964407	0.84[AFR][1000 genomes]
rs72964409	0.89[AFR][1000 genomes]
rs72964415	0.89[AFR][1000 genomes]
rs72964420	0.89[AFR][1000 genomes]
rs72964437	0.89[AFR][1000 genomes]
rs72964439	0.89[AFR][1000 genomes]
rs72964441	0.89[AFR][1000 genomes]
rs72964454	0.89[AFR][1000 genomes]
rs72964460	0.89[AFR][1000 genomes]
rs72964465	0.89[AFR][1000 genomes]
rs72964475	0.89[AFR][1000 genomes]
rs72964479	0.89[AFR][1000 genomes]
rs72964485	0.89[AFR][1000 genomes]
rs72964491	0.89[AFR][1000 genomes]
rs72968407	0.89[AFR][1000 genomes]
rs72968409	0.89[AFR][1000 genomes]
rs72968432	0.89[AFR][1000 genomes]
rs72968436	0.89[AFR][1000 genomes]
rs72968440	0.89[AFR][1000 genomes]
rs72968441	0.89[AFR][1000 genomes]
rs72968449	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1819960	chr4:107216320-107246136	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:107155600-107236000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:107178000-107236200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:107178000-107236200	Weak transcription	Right Ventricle	heart
5	chr4:107178000-107236600	Weak transcription	Esophagus	oesophagus
6	chr4:107178000-107236600	Weak transcription	Pancreas	Pancrea
7	chr4:107178200-107236000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:107194800-107227600	Weak transcription	Brain Angular Gyrus	brain
9	chr4:107198800-107235600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr4:107201400-107227800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:107202800-107236000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:107204000-107235800	Weak transcription	Psoas Muscle	Psoas
13	chr4:107204000-107236200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:107205600-107236000	Weak transcription	Brain Anterior Caudate	brain
15	chr4:107205800-107227600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr4:107207000-107227600	Weak transcription	Brain Substantia Nigra	brain
17	chr4:107208000-107229600	Weak transcription	Aorta	Aorta
18	chr4:107208800-107226000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr4:107209000-107226800	Weak transcription	NHEK	skin
20	chr4:107209000-107229400	Weak transcription	GM12878-XiMat	blood
21	chr4:107209000-107231200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:107209200-107236000	Weak transcription	HMEC	breast
23	chr4:107211000-107226200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr4:107212200-107234400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:107212400-107227800	Weak transcription	Fetal Brain Female	brain
26	chr4:107213200-107235600	Weak transcription	Fetal Kidney	kidney
27	chr4:107213200-107236200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr4:107213400-107236000	Weak transcription	Colon Smooth Muscle	Colon
29	chr4:107213400-107236200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr4:107214200-107227800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:107215600-107236000	Weak transcription	Brain Germinal Matrix	brain
32	chr4:107215600-107236200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr4:107215800-107229600	Weak transcription	Dnd41	blood
34	chr4:107215800-107236600	Weak transcription	Small Intestine	intestine
35	chr4:107215800-107236800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:107216000-107235600	Weak transcription	Fetal Intestine Small	intestine
37	chr4:107216200-107229200	Weak transcription	Fetal Lung	lung
38	chr4:107216200-107236200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr4:107216200-107236200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr4:107216200-107236200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr4:107216400-107226800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr4:107216400-107228200	Weak transcription	Adipose Nuclei	Adipose
43	chr4:107216400-107229400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr4:107216400-107229600	Weak transcription	Gastric	stomach
45	chr4:107216400-107233800	Weak transcription	NH-A	brain
46	chr4:107216400-107235200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr4:107216400-107236000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr4:107216400-107236200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr4:107216400-107236200	Weak transcription	Thymus	Thymus
50	chr4:107216400-107236600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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