Variant report

Variant	rs72958897
Chromosome Location	chr4:106935370-106935371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:106925210..106927104-chr4:106934407..106935960,2	MCF-7	breast:
2	chr4:106934510..106937161-chr4:106937686..106939688,2	K562	blood:
3	chr4:106933880..106935775-chr4:106939732..106941383,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TBCK-1	chr4:106935345-106935469	XLOC_004040

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1988966	0.82[AFR][1000 genomes]
rs57139070	0.87[AFR][1000 genomes]
rs59985162	0.89[AFR][1000 genomes]
rs60334311	0.91[AFR][1000 genomes]
rs60882191	0.91[AFR][1000 genomes]
rs62320122	1.00[AMR][1000 genomes]
rs72891619	0.85[AFR][1000 genomes]
rs72891621	0.85[AFR][1000 genomes]
rs72891622	0.85[AFR][1000 genomes]
rs72891625	0.85[AFR][1000 genomes]
rs72891627	0.85[AFR][1000 genomes]
rs72891632	0.85[AFR][1000 genomes]
rs72891640	0.85[AFR][1000 genomes]
rs72891645	0.85[AFR][1000 genomes]
rs72891650	0.85[AFR][1000 genomes]
rs72891660	0.83[AFR][1000 genomes]
rs72891662	0.85[AFR][1000 genomes]
rs72891664	0.85[AFR][1000 genomes]
rs72891668	0.85[AFR][1000 genomes]
rs72891675	0.85[AFR][1000 genomes]
rs72891682	0.80[AFR][1000 genomes]
rs72891685	0.80[AFR][1000 genomes]
rs72958833	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958842	0.89[AFR][1000 genomes]
rs72958848	0.89[AFR][1000 genomes]
rs72958849	0.89[AFR][1000 genomes]
rs72958876	0.91[AFR][1000 genomes]
rs72958883	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958889	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72960676	0.91[AFR][1000 genomes]
rs72962516	0.87[AFR][1000 genomes]
rs72962593	0.87[AFR][1000 genomes]
rs72962597	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962598	0.85[AFR][1000 genomes]
rs72962600	0.85[AFR][1000 genomes]
rs72962601	0.85[AFR][1000 genomes]
rs72964404	0.85[AFR][1000 genomes]
rs72964407	0.80[AFR][1000 genomes]
rs72964409	0.85[AFR][1000 genomes]
rs72964415	0.85[AFR][1000 genomes]
rs72964420	0.85[AFR][1000 genomes]
rs72964437	0.85[AFR][1000 genomes]
rs72964439	0.85[AFR][1000 genomes]
rs72964441	0.85[AFR][1000 genomes]
rs72964454	0.85[AFR][1000 genomes]
rs72964460	0.85[AFR][1000 genomes]
rs72964465	0.85[AFR][1000 genomes]
rs72964475	0.85[AFR][1000 genomes]
rs72964479	0.85[AFR][1000 genomes]
rs72964485	0.85[AFR][1000 genomes]
rs72964491	0.85[AFR][1000 genomes]
rs72968407	0.85[AFR][1000 genomes]
rs72968409	0.85[AFR][1000 genomes]
rs72968432	0.85[AFR][1000 genomes]
rs72968436	0.85[AFR][1000 genomes]
rs72968440	0.85[AFR][1000 genomes]
rs72968441	0.85[AFR][1000 genomes]
rs72968449	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106935000-106948400	Weak transcription	Aorta	Aorta

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