Variant report

Variant	rs72958889
Chromosome Location	chr4:106924827-106924828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs57139070	0.81[AFR][1000 genomes]
rs59985162	0.96[AFR][1000 genomes]
rs60334311	0.98[AFR][1000 genomes]
rs60882191	0.98[AFR][1000 genomes]
rs62320122	1.00[AMR][1000 genomes]
rs72958833	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958842	0.96[AFR][1000 genomes]
rs72958848	0.96[AFR][1000 genomes]
rs72958849	0.96[AFR][1000 genomes]
rs72958876	0.98[AFR][1000 genomes]
rs72958883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958897	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72960676	0.85[AFR][1000 genomes]
rs72962516	0.81[AFR][1000 genomes]
rs72962593	0.81[AFR][1000 genomes]
rs72962597	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106907800-106925000	Weak transcription	Pancreas	Pancrea
2	chr4:106924200-106925600	Enhancers	HepG2	liver
3	chr4:106924800-106925000	Enhancers	Fetal Kidney	kidney
4	chr4:106924800-106925200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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