Variant report

Variant	rs60334311
Chromosome Location	chr4:106920404-106920405
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs59985162	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60882191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958833	0.96[AFR][1000 genomes]
rs72958842	0.98[AFR][1000 genomes]
rs72958848	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72958849	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72958876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958883	0.98[AFR][1000 genomes]
rs72958889	0.98[AFR][1000 genomes]
rs72958897	0.91[AFR][1000 genomes]
rs72960676	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106907800-106925000	Weak transcription	Pancreas	Pancrea
2	chr4:106912400-106920800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:106916200-106922200	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:106918400-106920600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:106918400-106921000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:106919200-106921000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:106919200-106921000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:106919400-106921000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:106919400-106921000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:106919800-106920800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:106919800-106920800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:106919800-106920800	Weak transcription	Fetal Kidney	kidney
13	chr4:106919800-106921200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr4:106919800-106924200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:106920000-106920800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:106920200-106920600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:106920400-106920800	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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