Variant report

Variant	rs72958842
Chromosome Location	chr4:106912792-106912793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs59985162	0.96[AFR][1000 genomes]
rs60334311	0.98[AFR][1000 genomes]
rs60882191	0.98[AFR][1000 genomes]
rs72958833	0.98[AFR][1000 genomes]
rs72958848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958876	0.98[AFR][1000 genomes]
rs72958883	0.96[AFR][1000 genomes]
rs72958889	0.96[AFR][1000 genomes]
rs72958897	0.89[AFR][1000 genomes]
rs72960676	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106907800-106925000	Weak transcription	Pancreas	Pancrea
2	chr4:106909800-106913000	Enhancers	Aorta	Aorta
3	chr4:106909800-106913200	Enhancers	HUVEC	blood vessel
4	chr4:106910000-106913200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr4:106910000-106913400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:106910400-106912800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:106910400-106913400	Enhancers	Fetal Muscle Leg	muscle
8	chr4:106910600-106913200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:106910600-106913200	Enhancers	Fetal Heart	heart
10	chr4:106910600-106913200	Enhancers	Fetal Stomach	stomach
11	chr4:106910600-106913200	Enhancers	HSMM	muscle
12	chr4:106910800-106912800	Enhancers	HMEC	breast
13	chr4:106910800-106913200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr4:106910800-106913200	Enhancers	Psoas Muscle	Psoas
15	chr4:106910800-106913200	Enhancers	HSMMtube	muscle
16	chr4:106911200-106914000	Enhancers	Adipose Nuclei	Adipose
17	chr4:106911400-106912800	Enhancers	Right Ventricle	heart
18	chr4:106911400-106913000	Enhancers	Right Atrium	heart
19	chr4:106911400-106913200	Enhancers	Esophagus	oesophagus
20	chr4:106911400-106913200	Enhancers	Left Ventricle	heart
21	chr4:106911400-106913200	Enhancers	Spleen	Spleen
22	chr4:106911400-106913400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:106912000-106913000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:106912000-106913200	Enhancers	Fetal Muscle Trunk	muscle
25	chr4:106912000-106913200	Enhancers	Lung	lung
26	chr4:106912000-106913200	Enhancers	Stomach Smooth Muscle	stomach
27	chr4:106912000-106915400	Weak transcription	Colon Smooth Muscle	Colon
28	chr4:106912200-106912800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:106912400-106913600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:106912400-106920800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:106912600-106913000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:106912600-106913600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:106912600-106915200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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