Variant report
Variant | rs12502087 |
---|---|
Chromosome Location | chr4:87091558-87091559 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10516768 | 0.89[AFR][1000 genomes] |
rs11097098 | 0.84[AFR][1000 genomes] |
rs11097099 | 0.85[AFR][1000 genomes] |
rs11097100 | 0.85[AFR][1000 genomes] |
rs11932859 | 0.91[AFR][1000 genomes] |
rs11944466 | 0.85[AFR][1000 genomes] |
rs11947870 | 0.84[AFR][1000 genomes] |
rs12498902 | 0.84[AFR][1000 genomes] |
rs12498923 | 0.84[AFR][1000 genomes] |
rs12498980 | 0.84[AFR][1000 genomes] |
rs12499006 | 0.84[AFR][1000 genomes] |
rs12500023 | 0.81[AFR][1000 genomes] |
rs12501090 | 0.80[AFR][1000 genomes] |
rs12501551 | 0.84[AFR][1000 genomes] |
rs12501743 | 0.81[AFR][1000 genomes] |
rs12504127 | 0.84[AFR][1000 genomes] |
rs12505443 | 0.82[AFR][1000 genomes] |
rs12505532 | 0.81[AFR][1000 genomes] |
rs12505959 | 0.84[AFR][1000 genomes] |
rs12506828 | 0.81[AFR][1000 genomes] |
rs12508286 | 0.85[AFR][1000 genomes] |
rs12508372 | 0.85[AFR][1000 genomes] |
rs12509769 | 0.91[AFR][1000 genomes] |
rs12509960 | 0.81[AFR][1000 genomes] |
rs12510373 | 0.80[AFR][1000 genomes] |
rs12511499 | 0.84[AFR][1000 genomes] |
rs12511602 | 0.84[AFR][1000 genomes] |
rs12511667 | 0.86[AFR][1000 genomes] |
rs12513122 | 0.84[AFR][1000 genomes] |
rs12513237 | 0.81[AFR][1000 genomes] |
rs12513374 | 0.89[AFR][1000 genomes] |
rs1460766 | 0.85[AFR][1000 genomes] |
rs16996040 | 0.80[AFR][1000 genomes] |
rs17011396 | 0.89[AFR][1000 genomes] |
rs17011397 | 0.89[AFR][1000 genomes] |
rs17011400 | 0.89[AFR][1000 genomes] |
rs17011407 | 0.88[AFR][1000 genomes] |
rs17011409 | 0.89[AFR][1000 genomes] |
rs17011410 | 0.87[AFR][1000 genomes] |
rs17011419 | 0.85[AFR][1000 genomes] |
rs17011428 | 0.85[AFR][1000 genomes] |
rs17011432 | 0.85[AFR][1000 genomes] |
rs17011445 | 0.85[AFR][1000 genomes] |
rs17011457 | 0.81[AFR][1000 genomes] |
rs17011458 | 0.81[AFR][1000 genomes] |
rs17011459 | 0.81[AFR][1000 genomes] |
rs17011467 | 0.81[AFR][1000 genomes] |
rs17011472 | 0.81[AFR][1000 genomes] |
rs17011479 | 0.81[AFR][1000 genomes] |
rs17011487 | 0.81[AFR][1000 genomes] |
rs17011489 | 0.81[AFR][1000 genomes] |
rs17011492 | 0.81[AFR][1000 genomes] |
rs17011516 | 0.84[AFR][1000 genomes] |
rs17011519 | 0.84[AFR][1000 genomes] |
rs17011522 | 0.84[AFR][1000 genomes] |
rs17011526 | 0.84[AFR][1000 genomes] |
rs17011533 | 0.81[AFR][1000 genomes] |
rs17011537 | 0.81[AFR][1000 genomes] |
rs17011551 | 0.84[AFR][1000 genomes] |
rs17253274 | 0.81[AFR][1000 genomes] |
rs1903362 | 0.85[AFR][1000 genomes] |
rs1903363 | 0.85[AFR][1000 genomes] |
rs2007976 | 0.87[AFR][1000 genomes] |
rs28489900 | 0.84[AFR][1000 genomes] |
rs28722583 | 0.82[AFR][1000 genomes] |
rs4434210 | 0.84[AFR][1000 genomes] |
rs4499692 | 0.87[AFR][1000 genomes] |
rs5004884 | 0.87[AFR][1000 genomes] |
rs6810839 | 0.84[AFR][1000 genomes] |
rs6810895 | 0.84[AFR][1000 genomes] |
rs6810953 | 0.84[AFR][1000 genomes] |
rs6811046 | 0.84[AFR][1000 genomes] |
rs6818726 | 0.84[AFR][1000 genomes] |
rs6826762 | 0.86[AFR][1000 genomes] |
rs6830872 | 0.87[AFR][1000 genomes] |
rs6831733 | 0.84[AFR][1000 genomes] |
rs6836163 | 0.87[AFR][1000 genomes] |
rs6836359 | 0.87[AFR][1000 genomes] |
rs6844343 | 0.87[AFR][1000 genomes] |
rs6844573 | 0.88[AFR][1000 genomes] |
rs6849947 | 0.87[AFR][1000 genomes] |
rs6850605 | 0.87[AFR][1000 genomes] |
rs6851183 | 0.87[AFR][1000 genomes] |
rs6853248 | 0.82[AFR][1000 genomes] |
rs7661197 | 0.84[AFR][1000 genomes] |
rs7678392 | 0.84[AFR][1000 genomes] |
rs7679167 | 0.85[AFR][1000 genomes] |
rs7688495 | 0.84[AFR][1000 genomes] |
rs7696982 | 0.82[AFR][1000 genomes] |
rs7697017 | 0.87[AFR][1000 genomes] |
rs7699144 | 0.84[AFR][1000 genomes] |
rs7699333 | 0.84[AFR][1000 genomes] |
rs9715454 | 0.91[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1009622 | chr4:86893536-87119153 | Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv1003585 | chr4:86957967-87250436 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | esv2754254 | chr4:86979147-87108510 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
4 | nsv879521 | chr4:86979927-87165758 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1005338 | chr4:87023398-87108555 | Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | esv2757070 | chr4:87075759-87138765 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
7 | esv2759263 | chr4:87075759-87138765 | Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
8 | nsv594786 | chr4:87076360-87609320 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:87052000-87114200 | Weak transcription | Ovary | ovary |
2 | chr4:87078000-87113400 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
3 | chr4:87089600-87097600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |