Variant report

Variant	rs12502633
Chromosome Location	chr4:21927862-21927863
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1015950	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1022247	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10516406	0.93[ASN][1000 genomes]
rs11728026	0.81[ASN][1000 genomes]
rs12509508	0.96[ASN][1000 genomes]
rs13118537	0.93[ASN][1000 genomes]
rs13132720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs13132737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1996131	1.00[CHB][hapmap]
rs2323162	0.85[CEU][hapmap]
rs35494764	0.97[ASN][1000 genomes]
rs4697248	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs4697250	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6820764	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs6831938	0.88[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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