Variant report

Variant	rs12503274
Chromosome Location	chr4:45136995-45136996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10005495	0.88[EUR][1000 genomes]
rs10012686	0.87[EUR][1000 genomes]
rs10016191	0.88[EUR][1000 genomes]
rs10018394	0.88[EUR][1000 genomes]
rs10019093	0.85[EUR][1000 genomes]
rs10020674	0.88[EUR][1000 genomes]
rs10020926	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10021047	0.85[EUR][1000 genomes]
rs10021963	0.88[EUR][1000 genomes]
rs10022246	0.85[EUR][1000 genomes]
rs10024891	0.85[EUR][1000 genomes]
rs10029889	0.87[EUR][1000 genomes]
rs10033541	0.88[EUR][1000 genomes]
rs10222855	0.85[EUR][1000 genomes]
rs10222856	0.85[EUR][1000 genomes]
rs10938392	0.88[EUR][1000 genomes]
rs10938394	0.85[EUR][1000 genomes]
rs10938396	0.85[EUR][1000 genomes]
rs1120904	0.88[EUR][1000 genomes]
rs1121888	0.88[EUR][1000 genomes]
rs11724206	0.88[EUR][1000 genomes]
rs11727131	0.88[EUR][1000 genomes]
rs11734406	0.85[EUR][1000 genomes]
rs12510234	0.80[EUR][1000 genomes]
rs13107115	0.88[EUR][1000 genomes]
rs13114549	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13118724	0.85[EUR][1000 genomes]
rs13119513	0.87[EUR][1000 genomes]
rs1512309	0.88[EUR][1000 genomes]
rs17608635	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1849331	0.85[EUR][1000 genomes]
rs1849335	0.85[EUR][1000 genomes]
rs1849336	0.85[EUR][1000 genomes]
rs1858411	0.87[EUR][1000 genomes]
rs1858412	0.88[EUR][1000 genomes]
rs1988451	0.89[EUR][1000 genomes]
rs1996024	0.85[EUR][1000 genomes]
rs2221870	0.88[EUR][1000 genomes]
rs28399749	0.88[EUR][1000 genomes]
rs28409309	0.85[EUR][1000 genomes]
rs28510411	0.85[EUR][1000 genomes]
rs28512179	0.80[EUR][1000 genomes]
rs28551714	0.88[EUR][1000 genomes]
rs28585622	0.83[EUR][1000 genomes]
rs28620616	0.84[EUR][1000 genomes]
rs35964982	0.85[EUR][1000 genomes]
rs4146315	0.85[EUR][1000 genomes]
rs4146316	0.85[EUR][1000 genomes]
rs4272053	0.88[EUR][1000 genomes]
rs57202541	0.85[EUR][1000 genomes]
rs6811446	0.85[EUR][1000 genomes]
rs6817286	0.80[EUR][1000 genomes]
rs6824930	0.85[EUR][1000 genomes]
rs6826070	0.85[EUR][1000 genomes]
rs979579	0.88[EUR][1000 genomes]
rs984151	0.88[EUR][1000 genomes]
rs9884241	0.88[EUR][1000 genomes]
rs992610	0.84[EUR][1000 genomes]
rs997018	0.88[EUR][1000 genomes]
rs9998685	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45125800-45174400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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