Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10003954	0.82[EUR][1000 genomes]
rs10015682	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10020926	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10027158	0.82[EUR][1000 genomes]
rs10428432	0.82[EUR][1000 genomes]
rs10428433	0.82[EUR][1000 genomes]
rs10938387	0.82[EUR][1000 genomes]
rs11722695	0.82[EUR][1000 genomes]
rs11732028	0.82[EUR][1000 genomes]
rs12503274	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12510234	0.83[EUR][1000 genomes]
rs13126186	0.82[EUR][1000 genomes]
rs13147324	0.82[EUR][1000 genomes]
rs13152342	0.82[EUR][1000 genomes]
rs1512304	0.82[EUR][1000 genomes]
rs17608635	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28550246	0.82[EUR][1000 genomes]
rs4518285	0.84[EUR][1000 genomes]
rs4561959	0.80[EUR][1000 genomes]
rs4616793	0.82[EUR][1000 genomes]
rs4974506	0.82[EUR][1000 genomes]
rs6814379	0.82[EUR][1000 genomes]
rs6817286	0.80[EUR][1000 genomes]
rs7356163	0.82[EUR][1000 genomes]
rs7672139	0.82[EUR][1000 genomes]
rs7680659	0.82[EUR][1000 genomes]
rs9917962	0.82[EUR][1000 genomes]
rs9991441	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2752047	chr4:44968572-45072206	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45038600-45059000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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