Variant report

Variant	rs13152342
Chromosome Location	chr4:45102612-45102613
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10003954	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10005495	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10007392	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10012686	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10015597	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10016191	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10018394	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10019093	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10020674	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10020926	0.81[EUR][1000 genomes]
rs10021047	0.87[EUR][1000 genomes]
rs10021963	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10022246	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10024891	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10027158	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029889	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10033541	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10222855	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10222856	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10428432	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10428433	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938387	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938392	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10938394	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10938396	0.87[EUR][1000 genomes]
rs1120904	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1121888	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11722695	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11724206	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11727131	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11732028	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11734406	0.87[EUR][1000 genomes]
rs12510234	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107115	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13114549	0.82[EUR][1000 genomes]
rs13118724	0.87[EUR][1000 genomes]
rs13119513	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13126186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13147324	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1398263	0.86[ASN][1000 genomes]
rs1398265	0.86[ASN][1000 genomes]
rs1512304	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1512309	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17608635	0.85[EUR][1000 genomes]
rs1849331	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1849335	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1849336	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1858411	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1858412	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1988451	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1996024	0.87[EUR][1000 genomes]
rs2221870	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28399749	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28409309	0.87[EUR][1000 genomes]
rs28510411	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28512179	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28550246	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28551714	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28585622	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28620616	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28705704	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs35964982	0.87[EUR][1000 genomes]
rs4146315	0.87[EUR][1000 genomes]
rs4146316	0.87[EUR][1000 genomes]
rs4272053	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4299625	0.82[ASN][1000 genomes]
rs4305551	0.81[ASN][1000 genomes]
rs4429758	0.82[ASN][1000 genomes]
rs4518285	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4561959	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4616793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4974506	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57202541	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6447405	0.83[ASN][1000 genomes]
rs6447423	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6811446	0.87[EUR][1000 genomes]
rs6814379	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6817286	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6824930	0.87[EUR][1000 genomes]
rs6826070	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6828639	0.82[ASN][1000 genomes]
rs6842444	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6845703	0.83[ASN][1000 genomes]
rs7356163	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7662792	0.86[ASN][1000 genomes]
rs7671806	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7672139	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7680659	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7682029	0.82[ASN][1000 genomes]
rs7689003	0.86[ASN][1000 genomes]
rs959904	0.84[ASN][1000 genomes]
rs963317	0.84[ASN][1000 genomes]
rs979579	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs984151	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9884241	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9917962	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992610	0.85[EUR][1000 genomes]
rs997018	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9991441	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998685	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45096000-45104800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:45102200-45103800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr4:45102400-45104000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:45102600-45104000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:45102600-45104200	Enhancers	Fetal Heart	heart

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