Variant report

Variant	rs28705704
Chromosome Location	chr4:45066861-45066862
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10003954	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10005495	0.83[ASN][1000 genomes]
rs10007392	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10012686	0.82[ASN][1000 genomes]
rs10015597	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10016191	0.83[ASN][1000 genomes]
rs10020674	0.83[ASN][1000 genomes]
rs10021963	0.80[ASN][1000 genomes]
rs10027158	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10033541	0.83[ASN][1000 genomes]
rs10428432	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10428433	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10938387	0.96[ASN][1000 genomes]
rs11722695	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11732028	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12510234	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13119513	0.82[ASN][1000 genomes]
rs13126186	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13147324	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13152342	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1398263	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1398265	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1512304	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28550246	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28551714	0.80[ASN][1000 genomes]
rs28585622	0.81[ASN][1000 genomes]
rs4272053	0.82[ASN][1000 genomes]
rs4299625	0.84[ASN][1000 genomes]
rs4305551	0.83[ASN][1000 genomes]
rs4429758	0.84[ASN][1000 genomes]
rs4518285	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4561959	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4616793	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4974506	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6447405	0.85[ASN][1000 genomes]
rs6447423	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6814379	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6817286	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6828639	0.84[ASN][1000 genomes]
rs6842444	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6845703	0.90[EUR][1000 genomes]
rs7356163	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7662792	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7671806	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7672139	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7680659	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7682029	0.84[ASN][1000 genomes]
rs7689003	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs959904	0.81[ASN][1000 genomes]
rs963317	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs979579	0.80[ASN][1000 genomes]
rs9884241	0.83[ASN][1000 genomes]
rs9917962	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9991441	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9998685	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2752047	chr4:44968572-45072206	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv980502	chr4:45065237-45077593	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45065600-45067800	Enhancers	Fetal Stomach	stomach
2	chr4:45066000-45071400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:45066000-45080000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:45066200-45067400	Weak transcription	Brain Germinal Matrix	brain
5	chr4:45066600-45067000	Enhancers	Fetal Muscle Trunk	muscle
6	chr4:45066800-45067000	Enhancers	Fetal Muscle Leg	muscle

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