Variant report

Variant	rs10015597
Chromosome Location	chr4:45054322-45054323
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10003954	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10005495	0.83[EUR][1000 genomes]
rs10007392	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10012686	0.82[EUR][1000 genomes]
rs10015682	0.82[EUR][1000 genomes]
rs10016191	0.83[EUR][1000 genomes]
rs10018394	0.82[EUR][1000 genomes]
rs10020674	0.83[EUR][1000 genomes]
rs10021963	0.83[EUR][1000 genomes]
rs10027158	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10033541	0.83[EUR][1000 genomes]
rs10428432	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10428433	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10938387	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10938392	0.83[EUR][1000 genomes]
rs1120904	0.82[EUR][1000 genomes]
rs1121888	0.83[EUR][1000 genomes]
rs11722695	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11724206	0.82[EUR][1000 genomes]
rs11727131	0.83[EUR][1000 genomes]
rs11732028	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12510234	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13107115	0.83[EUR][1000 genomes]
rs13119513	0.83[EUR][1000 genomes]
rs13126186	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13147324	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13152342	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1512304	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1512309	0.83[EUR][1000 genomes]
rs1858411	0.82[EUR][1000 genomes]
rs1858412	0.83[EUR][1000 genomes]
rs1988451	0.82[EUR][1000 genomes]
rs2221870	0.83[EUR][1000 genomes]
rs28399749	0.82[EUR][1000 genomes]
rs28550246	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28551714	0.83[EUR][1000 genomes]
rs28585622	0.87[EUR][1000 genomes]
rs28705704	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4272053	0.83[EUR][1000 genomes]
rs4518285	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4561959	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4588498	0.81[ASN][1000 genomes]
rs4616793	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4974506	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6447423	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6814379	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6817286	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6842444	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7356163	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7671806	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7672139	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7680659	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs979579	0.83[EUR][1000 genomes]
rs984151	0.83[EUR][1000 genomes]
rs9884241	0.83[EUR][1000 genomes]
rs9917962	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs997018	0.82[EUR][1000 genomes]
rs9991441	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9998685	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2752047	chr4:44968572-45072206	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45038600-45059000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links