Variant report

Variant	rs4305551
Chromosome Location	chr4:45035197-45035198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10003954	0.81[ASN][1000 genomes]
rs10007392	0.84[ASN][1000 genomes]
rs10027158	0.81[ASN][1000 genomes]
rs10428432	0.81[ASN][1000 genomes]
rs10428433	0.81[ASN][1000 genomes]
rs10938387	0.81[ASN][1000 genomes]
rs11722695	0.84[ASN][1000 genomes]
rs11732028	0.84[ASN][1000 genomes]
rs12510234	0.81[ASN][1000 genomes]
rs13126186	0.81[ASN][1000 genomes]
rs13147324	0.82[ASN][1000 genomes]
rs13152342	0.81[ASN][1000 genomes]
rs1512304	0.84[ASN][1000 genomes]
rs28705704	0.83[ASN][1000 genomes]
rs4518285	0.84[ASN][1000 genomes]
rs4561959	0.84[ASN][1000 genomes]
rs4616793	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs4974506	0.81[ASN][1000 genomes]
rs6447423	0.81[ASN][1000 genomes]
rs6814379	0.84[ASN][1000 genomes]
rs6817286	0.81[ASN][1000 genomes]
rs6842444	0.84[ASN][1000 genomes]
rs73250537	0.80[AMR][1000 genomes]
rs7356163	0.82[ASN][1000 genomes]
rs7671806	0.84[ASN][1000 genomes]
rs7672139	0.82[ASN][1000 genomes]
rs7680659	0.84[ASN][1000 genomes]
rs9917962	0.81[ASN][1000 genomes]
rs9991441	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv432596	chr4:44951672-45037672	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2752047	chr4:44968572-45072206	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv878983	chr4:44982938-45039597	Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3394836	chr4:45033195-45036093	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv3365192	chr4:45033645-45035943	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45029400-45035800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:45032200-45038400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:45032400-45038600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:45033200-45035800	Enhancers	Fetal Heart	heart
5	chr4:45035000-45036000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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