Variant report

Variant	rs1398265
Chromosome Location	chr4:45122620-45122621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10003954	0.86[ASN][1000 genomes]
rs10005495	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10007392	0.84[ASN][1000 genomes]
rs10012579	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10012686	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10016191	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018394	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10019093	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10020674	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021047	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10021963	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10022246	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10024891	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10027158	0.86[ASN][1000 genomes]
rs10029889	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10032137	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10033541	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10222855	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10222856	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10428432	0.86[ASN][1000 genomes]
rs10428433	0.86[ASN][1000 genomes]
rs10938387	0.86[ASN][1000 genomes]
rs10938392	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10938394	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10938396	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1120904	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1121888	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11722695	0.84[ASN][1000 genomes]
rs11724206	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11727131	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11732028	0.84[ASN][1000 genomes]
rs11734406	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12504429	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12505216	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12510234	0.86[ASN][1000 genomes]
rs12512251	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12650122	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12650843	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13107115	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13114648	0.81[AFR][1000 genomes]
rs13118724	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13119513	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13126186	0.86[ASN][1000 genomes]
rs13135680	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13147324	0.85[ASN][1000 genomes]
rs13152342	0.86[ASN][1000 genomes]
rs1398263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398264	0.84[ASN][1000 genomes]
rs1512304	0.84[ASN][1000 genomes]
rs1512309	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1512310	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1512311	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1512312	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1512324	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1849331	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1849335	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1849336	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1858411	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1858412	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1913018	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1988451	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1996024	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2221870	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28399749	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28409309	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28510411	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28512179	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28550246	0.85[ASN][1000 genomes]
rs28551714	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28585622	0.80[ASN][1000 genomes]
rs28620616	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28705704	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34111600	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs35964982	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4146315	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4146316	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4272053	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4518285	0.84[ASN][1000 genomes]
rs4561959	0.83[ASN][1000 genomes]
rs4616793	0.85[ASN][1000 genomes]
rs4974506	0.86[ASN][1000 genomes]
rs57202541	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57883584	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6447423	0.84[ASN][1000 genomes]
rs6447433	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6811446	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6814379	0.84[ASN][1000 genomes]
rs6817286	0.84[ASN][1000 genomes]
rs6824930	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6826070	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6842444	0.84[ASN][1000 genomes]
rs6845703	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7356163	0.82[ASN][1000 genomes]
rs7662792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7671806	0.84[ASN][1000 genomes]
rs7672139	0.83[ASN][1000 genomes]
rs7680659	0.84[ASN][1000 genomes]
rs7689003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693715	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs963317	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs969992	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs979579	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs984151	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9884241	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9917962	0.86[ASN][1000 genomes]
rs992610	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs997018	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9991441	0.86[ASN][1000 genomes]
rs9998685	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9999372	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45121400-45125400	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr4:45121800-45124000	Enhancers	Fetal Heart	heart
3	chr4:45122000-45123000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:45122600-45123600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links