Variant report

Variant	rs12512251
Chromosome Location	chr4:45131561-45131562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10005495	0.81[ASN][1000 genomes]
rs10012579	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10016191	0.81[ASN][1000 genomes]
rs10018394	0.82[ASN][1000 genomes]
rs10019093	0.81[ASN][1000 genomes]
rs10020674	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10021963	0.84[ASN][1000 genomes]
rs10022246	0.81[ASN][1000 genomes]
rs10024891	0.83[ASN][1000 genomes]
rs10029889	0.81[ASN][1000 genomes]
rs10032137	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10033541	0.81[ASN][1000 genomes]
rs10222855	0.81[ASN][1000 genomes]
rs10222856	0.81[ASN][1000 genomes]
rs10938392	0.84[ASN][1000 genomes]
rs10938393	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10938394	0.83[ASN][1000 genomes]
rs1120904	0.83[ASN][1000 genomes]
rs1121888	0.84[ASN][1000 genomes]
rs11724206	0.83[ASN][1000 genomes]
rs11727131	0.83[ASN][1000 genomes]
rs12504429	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12505216	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12650122	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12650843	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13107115	0.84[ASN][1000 genomes]
rs13114648	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13119513	0.82[ASN][1000 genomes]
rs13135680	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1398263	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1398264	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1398265	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1473819	0.89[ASN][1000 genomes]
rs1512309	0.84[ASN][1000 genomes]
rs1512310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1512311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1512312	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1512324	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1849331	0.81[ASN][1000 genomes]
rs1849335	0.83[ASN][1000 genomes]
rs1849336	0.83[ASN][1000 genomes]
rs1858411	0.83[ASN][1000 genomes]
rs1858412	0.83[ASN][1000 genomes]
rs1913018	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1988451	0.84[ASN][1000 genomes]
rs2221870	0.83[ASN][1000 genomes]
rs28399749	0.83[ASN][1000 genomes]
rs28510411	0.81[ASN][1000 genomes]
rs28512179	0.81[ASN][1000 genomes]
rs28551714	0.84[ASN][1000 genomes]
rs28620616	0.83[ASN][1000 genomes]
rs34111600	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34601600	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4272053	0.82[ASN][1000 genomes]
rs4299625	0.81[ASN][1000 genomes]
rs4429758	0.81[ASN][1000 genomes]
rs57202541	0.83[ASN][1000 genomes]
rs57883584	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62409635	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6447433	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6810440	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6826070	0.81[ASN][1000 genomes]
rs6828639	0.81[ASN][1000 genomes]
rs6845132	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6845703	0.83[ASN][1000 genomes]
rs7654230	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662792	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7682029	0.81[ASN][1000 genomes]
rs7686080	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7686413	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7689003	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7693715	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs959904	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs963317	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs969992	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs979579	0.84[ASN][1000 genomes]
rs984151	0.83[ASN][1000 genomes]
rs9884241	0.81[ASN][1000 genomes]
rs992610	0.82[ASN][1000 genomes]
rs997018	0.83[ASN][1000 genomes]
rs9998685	0.84[AFR][1000 genomes]
rs9999372	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45125800-45174400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:45126800-45132800	Weak transcription	Stomach Mucosa	stomach

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