Variant report

Variant	rs10032137
Chromosome Location	chr4:45128327-45128328
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10005495	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10012579	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10012686	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10016191	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10018394	0.82[ASN][1000 genomes]
rs10019093	0.81[ASN][1000 genomes]
rs10020674	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10021963	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10022246	0.81[ASN][1000 genomes]
rs10024891	0.83[ASN][1000 genomes]
rs10029889	0.81[ASN][1000 genomes]
rs10033541	0.82[ASN][1000 genomes]
rs10222855	0.81[ASN][1000 genomes]
rs10222856	0.81[ASN][1000 genomes]
rs10938392	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10938393	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10938394	0.83[ASN][1000 genomes]
rs1120904	0.83[ASN][1000 genomes]
rs1121888	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11724206	0.83[ASN][1000 genomes]
rs11727131	0.83[ASN][1000 genomes]
rs12504429	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12505216	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12512251	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12650122	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12650843	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13107115	0.84[ASN][1000 genomes]
rs13114648	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13119513	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13135680	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398263	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1398264	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1398265	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1473819	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1512309	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1512310	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512311	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512312	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512324	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1849331	0.81[ASN][1000 genomes]
rs1849335	0.83[ASN][1000 genomes]
rs1849336	0.83[ASN][1000 genomes]
rs1858411	0.83[ASN][1000 genomes]
rs1858412	0.83[ASN][1000 genomes]
rs1913018	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1988451	0.84[ASN][1000 genomes]
rs2221870	0.83[ASN][1000 genomes]
rs28399749	0.83[ASN][1000 genomes]
rs28510411	0.81[ASN][1000 genomes]
rs28512179	0.80[ASN][1000 genomes]
rs28551714	0.84[ASN][1000 genomes]
rs28620616	0.83[ASN][1000 genomes]
rs34111600	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34601600	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4272053	0.83[ASN][1000 genomes]
rs4299625	0.81[ASN][1000 genomes]
rs4429758	0.81[ASN][1000 genomes]
rs57202541	0.83[ASN][1000 genomes]
rs57883584	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62409635	0.91[ASN][1000 genomes]
rs6447405	0.80[ASN][1000 genomes]
rs6447433	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6810440	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6826070	0.81[ASN][1000 genomes]
rs6828639	0.81[ASN][1000 genomes]
rs6845132	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6845703	0.83[ASN][1000 genomes]
rs7654230	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7662792	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7682029	0.81[ASN][1000 genomes]
rs7686080	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7686413	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7689003	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7693715	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs959904	0.84[ASN][1000 genomes]
rs963317	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs969992	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs979579	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs984151	0.83[ASN][1000 genomes]
rs9884241	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs992610	0.81[ASN][1000 genomes]
rs997018	0.83[ASN][1000 genomes]
rs9998685	0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs9999372	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10032137	HIGD2A	trans	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45125800-45174400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:45126800-45132800	Weak transcription	Stomach Mucosa	stomach
3	chr4:45127600-45128400	Enhancers	HUES48 Cell Line	embryonic stem cell

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